Dpse007023.1
Basic Information
- Insect
- Drosophila pseudotakahashii
- Gene Symbol
- -
- Assembly
- GCA_035046095.1
- Location
- JAWNOE010000108.1:989628-993496[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.008 0.68 10.8 0.3 2 23 65 86 64 86 0.96 2 13 0.0048 0.4 11.5 4.4 1 23 92 115 92 115 0.94 3 13 0.012 0.97 10.3 1.5 1 19 129 147 129 150 0.93 4 13 0.0074 0.63 10.9 3.0 2 22 166 186 165 186 0.92 5 13 0.36 30 5.6 2.0 2 23 438 460 437 460 0.94 6 13 0.015 1.2 10.0 0.3 1 23 485 507 485 507 0.97 7 13 0.0059 0.49 11.2 1.6 1 23 515 539 515 539 0.95 8 13 0.13 11 7.0 2.4 2 23 544 566 543 566 0.95 9 13 0.00033 0.028 15.2 0.2 2 21 579 598 578 599 0.93 10 13 0.0099 0.83 10.5 0.4 3 23 609 629 607 629 0.97 11 13 1e-06 8.4e-05 23.1 2.8 1 23 635 658 635 658 0.98 12 13 4e-05 0.0033 18.1 1.4 1 23 664 686 664 686 0.98 13 13 0.00037 0.031 15.0 2.9 1 23 692 714 692 714 0.95
Sequence Information
- Coding Sequence
- ATGCCGCCTCGAGTTCAAAAGCAAAGAGCCGCAAATAAACGAGAAGAACCGCGCGGAACCAGTTCGCAGCAATCGCTGCCGGCGAACCAGTTCCGCAGGCAAAAAACCGAGTCGATGGCTCCCAGCAGCAGTGCGGCGGCTGCGGCCACCAAGCTCCTGGTGGAGATCACCACGGACGGGGTGCCCAAGCTGCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTGGCCGGATATGTGAAGCACGTCAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCCGCCACTGCGATGCTCGGTTTTGTCACGAGGAGGAGCTGACCCAGCACGCCAAGGACGAGCACGGAGTCACCGGTGTGGCAGCTGGCCAGGAGCGCAAGCCCTTCGTTTGCGACAAGTGCGGGGCGGAGTACAAGTACCAGGAGGCCTATCGACGCCACTGCAGGACCAAGTGTGGCGAGGAGAAGATGTCGAAGGAGGAGTCGCGACCCATGGAGTGCAAGTGCTGCTACACCCGCTTTTCCAGCGCCTCCAATCTAACCAAGCACCGACGCAGTCGTCCCGACACCTGTGGCCAGCCGGAGTACGATGAGCCCGGCAAGTCGGAGCTGAAGAAAAAACGAAAGACCTTTCGCAAGAAGGGCAGAAAGAGGGActccgatgatgatgatgatgataccACCACCGAAGAATCGGACAGCGACGATGACATTCCTCTGGCCAGCCGGCTAAAGACGAAGCTAAAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCCGACTTTGAGCCAAACAACAGTGAGGACGATGCGGATGCATCCGGATTCCAGCTGCCTCCGCCGGCCATGGTCAAGGTTGAGGCCTTTGACGAAGAGGATTTCGAGTATCAGGACGCCAGCATGTATGTGAAGACCGAGAGCACCGATATCTTTAGCAACGAAAAGGACAAGCTCCTGGATGTGCTTCTCAACGAGGGTGATGGCCTGAAGCCCTTCGAGAGCTTGAAAGTGGAGCAGGGCGCTGGTATACTGGACGAGATCGCGGCCGTGCCGCTAGTGGAGGTGGCCGAGGAAGATGTCCTGGCCCTTAGGGGTCATAACAAGGAGCATACCGGGGAGAAAAGGAAACGAGGCAGGCCACCCAAGGAGAAGATACCTGTAATCAAGAGAAAGTATCGAAAGCGCAATCAACCAAGATCGCCCTCGCCTGAAGATTCCTCAGGTACTCCAAAACGCGTAGCTAAGATCAGCAAAAAGGAGCTTAAAGAGCGCCTCAAGATGATCAACAAAATGGAGAAATCATGGAAGTGTCCGCACTGCGTCAAAATATACCACATCCGCAAGCCCTACGAAAAGCATTTGCGCGACGACCACAAGTTGAACGAGGCGGAGATGAAGGAGATCTTCAAGGACGTGGACGTGCATGCCAAGCTGGATGAGGAGGTCTTCAAGTGCCCCATATGTAGCAAGATCTATCTGGTGGAGAAACGCTTGGTCACCCACATGAAGGTTCACGGCGAGGACGGCAAGCTGACCTTCAAGTGCCCCTGCTACTGCAACCTGTTCTTCGCCACCAAGGAACAGGCCACGGAGCACGCCAGGGCCCAGCACAAGGAGCTGCTCTACTGCGAGAAGTGCGACAAGTACATGACCGGCCACGACAGCCTCAAGAACCACGAACGCAATTTCCACTCGAAGAAGGAGCCGCGCAGTCAGCAGCGCAACCTCATCTGCGACAAGTGCGGCAAGAAGTTCACTGGACGCACCTCGCTCTCCGATCATGTGCGTTCCGACTGCGGACGCCTTCCGCTCTACGGCTGCAGTGTTTGCGGCAAGCATTTGTCCACGGCTGGTATTCTCAAGACGCACATGCTCCTTCACAAGGCAGACACACCGTACCAGTGCGACAAGTGCGGAAAGACATTCAAGGTGAAGGCGCAATACAAGTCGCACTTGAAGACGCGCCACACGGACTACAAGCCGTACAAGTGTCACCTGTGCCCCAAGGAGTATCCGTACAGGGAGAGCCTGCTCACCCACATGACCGTGCATACGGGCATCAAGCGATTCCTGTGCAATAACTGCGGCAAGCGCTTCACTTGCATCTCCAACTTGCAGGCCCATCGCAAGGTGCATGCCGACACCTGCGGGCAGCTGCCTTTGAATGCCAAGGCCACCCAGTACATGGGCGTGCAGCGCGGAAAACTCTTGATGGGCGCCAAGCCAGAGGCGGGCATGGAGTACGAGGAGACCAAGACCCTAATCGCCCAGGACGTCATCGACAGGGACATGCCCATGGCTCAGGAGCTAAACTTCCCATCCGACGGCTCGGCGCCACTGGCCACCGTGCCCCTGAACTACGCCTCCACGCACCTGGTGCCGCACATCGTACTACAGACCATGCAAGCCGAGGCCCGGCGATTGGAGTAA
- Protein Sequence
- MPPRVQKQRAANKREEPRGTSSQQSLPANQFRRQKTESMAPSSSAAAAATKLLVEITTDGVPKLHCPVCNKALVSLAGYVKHVKKHQPPGGFECRHCDARFCHEEELTQHAKDEHGVTGVAAGQERKPFVCDKCGAEYKYQEAYRRHCRTKCGEEKMSKEESRPMECKCCYTRFSSASNLTKHRRSRPDTCGQPEYDEPGKSELKKKRKTFRKKGRKRDSDDDDDDTTTEESDSDDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDDADASGFQLPPPAMVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPFESLKVEQGAGILDEIAAVPLVEVAEEDVLALRGHNKEHTGEKRKRGRPPKEKIPVIKRKYRKRNQPRSPSPEDSSGTPKRVAKISKKELKERLKMINKMEKSWKCPHCVKIYHIRKPYEKHLRDDHKLNEAEMKEIFKDVDVHAKLDEEVFKCPICSKIYLVEKRLVTHMKVHGEDGKLTFKCPCYCNLFFATKEQATEHARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKKEPRSQQRNLICDKCGKKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGSAPLATVPLNYASTHLVPHIVLQTMQAEARRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00608009;
- 90% Identity
- iTF_00606536;
- 80% Identity
- -