Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: pita
Assembly: GCA_035046095.1
Location: JAWNOE010000247.1:14090237-14092778[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0005 0.042 14.6 0.1 1 23 270 292 270 292 0.97

2 10 2.7e-05 0.0023 18.6 3.4 1 23 298 320 298 320 0.94

3 10 2.3e-05 0.002 18.8 2.1 1 23 326 348 326 348 0.99

4 10 0.044 3.7 8.5 0.3 1 23 354 376 354 376 0.96

5 10 0.00011 0.0094 16.7 0.3 1 23 382 404 382 404 0.95

6 10 5.4e-06 0.00046 20.8 0.8 1 23 410 432 410 432 0.94

7 10 4.7e-05 0.0039 17.8 4.8 1 23 438 460 438 460 0.98

8 10 0.00066 0.055 14.2 1.2 1 23 468 490 468 490 0.98

9 10 0.61 52 4.9 0.0 2 23 496 517 495 517 0.89

10 10 0.00072 0.061 14.1 2.2 1 23 523 546 523 546 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0005	0.042	14.6	0.1	1	23	270	292	270	292	0.97
2	10	2.7e-05	0.0023	18.6	3.4	1	23	298	320	298	320	0.94
3	10	2.3e-05	0.002	18.8	2.1	1	23	326	348	326	348	0.99
4	10	0.044	3.7	8.5	0.3	1	23	354	376	354	376	0.96
5	10	0.00011	0.0094	16.7	0.3	1	23	382	404	382	404	0.95
6	10	5.4e-06	0.00046	20.8	0.8	1	23	410	432	410	432	0.94
7	10	4.7e-05	0.0039	17.8	4.8	1	23	438	460	438	460	0.98
8	10	0.00066	0.055	14.2	1.2	1	23	468	490	468	490	0.98
9	10	0.61	52	4.9	0.0	2	23	496	517	495	517	0.89
10	10	0.00072	0.061	14.1	2.2	1	23	523	546	523	546	0.91

Sequence Information

Coding Sequence: ATGTCCTTTTATGGCTCAGTCCAGACGTGCTTAATCAATCAATTAACGGAGGTTAAGCGTGCTCGCCGCCGCGAAAACAAACTGCGATTGCATGTAGTGGTCTATGCCGGTGACGGAATGCCTGGGCATATTTGCCTGGAGTGTCGTCTACTCTTCGAGCACTGCTATCGTTTCAAGCAGATGTGCAAGCGGGCCGAGACGCTCCTCAAGCAATATCCGTTGACCGGAAACTGGCCAGCACCGCTGGAGAAGCCCCGTGCTCCCATAATGACGGTGGCTCCCAAAAAGGTGGTAGTCATaccagcagcagtagcagcggCATCCGAGGCTCCCGTTGCCAAAACTCCCAAAAAGCTCCTCAACACCCTGGCCAAGTCAAGTCCGGTGGTCATCGAAGAGGTCCAGGTGTTGGAAACCTCTTTGGTGCCCCACAGGAAGGTAGCAGTCTCCTCTCCAGTCGCCAATCGGCGATCCCATGCCTACGAGCTGAAGGTGGAGAACAACCAGGAGCTCTCCATGGACGATGTGCAGAACATGCTGGAGGATATGGCCAACGAACTGGACAAGGAGTTTGCCGAAGCCGCTCCAAAGAAATCACCGCTCAAACCAAAGGTGTTGAACAAGTCGTCGATAAGGATCTTGAACAAGGGACCCGCTGCGCCGGTGGAACCGCGCTTGGCCACGCCCCAAGTGAAGCGGGACGACAGCGGCAATGTGGCCATAGTGACCGAGGTTCTGGATGCCGAAGTCGCTCTAGACGATCAGGATGATCCGACGAAGAACGCCGAGAAGGTGGCCACCGATGTATTTCCGTGTCCCGACTGCGAACGCTCCTTtccgctgctgcagctgctcgaGATACATCGGCTGAATCACACGCGCTCGCGCAGCTTCCAGTGCCCGCATTGCGAGAAGAGCTTCTTCTCCAAGTACGACCTGGCCAAGCACAATTTCGTGCACACCGGCGAGCGACCCTTCAAGTGCGCCGTCTGCGCAAAGGACTTCACCCGAAAGGCGCTGCTCCATCGCCACGAGCGGACGCACACGGATGTGCCCAAGTTTATCTGCGTGTACTGCGAGAAGCCCTTCCTGTCGCGCCAGGAGATGGAGAAGCACGCCGAGCGGCACCAAAAGAAGCGCCCATTCCAGTGCGGCGTCTGCACCAAGTCGTTTGCTTTTAAGCAGGGATTGGAACGTCATGAGGTTGTCCACTCCACCAATCTTCCCTTTCCCTGTCAGCACTGCGAGCGGAGCTTCTCCACCGCCTCCAAGCTGGCTCGCCATCTGGTTGCCCATGCCGGCAAGAGGGCCTATCCCTGCAAGTACTGCCCCAAGTCGTACATGTTGTCCCACCATCTGTCGCGCCATCTGCGCATGCACACACAGAATTCGGACGCCTCGTTCGTGTGCAGCGTGTGCAAGATTTCGTTCACCACCTACAACACCATGCTGGAGCACTCGCGCACCCATGCTACTGCAAGTCTAAAGTGTCCCATGTGTGGGGAGCAAATCGAGGACATTGATGGTGTTGATGCTCATATGGAGCAGCACAAGGCGAGCGAGCGGCATGCCTGCGAGTTCTGCGACTACATTTTCATGAGTCAGAGCTGCCTGCAGCGGCACATCGAGGACGATCATGTGATGGATATGGAGCCGTACCAAAACGACTTCGACGACGAGGGCGAGGGCGAATGCAAGGAGGAACATATcgaagaagaggaggaggcggaggaggatgaAGACTTGGAGTATGTTAAGCAGGAGGAATTTGAGGCGGAGTATCTGGAAGACGATACCCTCGACGAGGATCACCTGGATGATAGCGACAACTCCTTTTCGCCGCCGCCCACAAAGCAGCGAAAAATAATCACTCCCAAGGGAGTCCAGCCATCCTCGCGCCAAACACGCAGCCGGGATACTCAAAAGGTCTCGCCAAAGGCCGTTGTTGTGAAGAAGGAAGCCAAGTCGCCTCCCAAATCGGAACGTTCGCTAGTTAAGAAACGCAAGTCCGCTAAATAA
Protein Sequence: MSFYGSVQTCLINQLTEVKRARRRENKLRLHVVVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLKQYPLTGNWPAPLEKPRAPIMTVAPKKVVVIPAAVAAASEAPVAKTPKKLLNTLAKSSPVVIEEVQVLETSLVPHRKVAVSSPVANRRSHAYELKVENNQELSMDDVQNMLEDMANELDKEFAEAAPKKSPLKPKVLNKSSIRILNKGPAAPVEPRLATPQVKRDDSGNVAIVTEVLDAEVALDDQDDPTKNAEKVATDVFPCPDCERSFPLLQLLEIHRLNHTRSRSFQCPHCEKSFFSKYDLAKHNFVHTGERPFKCAVCAKDFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHEVVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCPKSYMLSHHLSRHLRMHTQNSDASFVCSVCKISFTTYNTMLEHSRTHATASLKCPMCGEQIEDIDGVDAHMEQHKASERHACEFCDYIFMSQSCLQRHIEDDHVMDMEPYQNDFDDEGEGECKEEHIEEEEEAEEDEDLEYVKQEEFEAEYLEDDTLDEDHLDDSDNSFSPPPTKQRKIITPKGVQPSSRQTRSRDTQKVSPKAVVVKKEAKSPPKSERSLVKKRKSAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00605752;
90% Identity: iTF_00578721; iTF_00536959;
80% Identity: -