Basic Information

Insect: Drosophila pseudoobscura
Gene Symbol: RIM101
Assembly: GCA_009870125.2
Location: CM020868.1:24964445-24967424[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00084 0.063 13.9 0.6 1 23 161 184 161 184 0.97

2 12 3.5e-06 0.00026 21.4 4.6 1 23 189 212 189 212 0.97

3 12 2.8e-05 0.0021 18.6 3.2 1 23 217 239 217 239 0.98

4 12 3.6 2.7e+02 2.5 3.8 2 23 246 269 245 269 0.91

5 12 0.00062 0.047 14.3 3.9 3 23 280 301 279 301 0.95

6 12 0.0037 0.28 11.9 0.2 1 23 307 330 307 330 0.96

7 12 0.013 1 10.1 0.3 2 23 341 363 340 363 0.95

8 12 0.0011 0.082 13.6 0.4 1 23 392 414 392 414 0.97

9 12 1.6e-05 0.0012 19.3 4.6 1 23 421 443 421 443 0.96

10 12 0.00023 0.017 15.7 0.1 2 23 450 471 450 471 0.97

11 12 0.00051 0.039 14.6 0.8 1 23 478 500 478 500 0.99

12 12 0.00011 0.008 16.7 3.3 1 23 506 529 506 529 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00084	0.063	13.9	0.6	1	23	161	184	161	184	0.97
2	12	3.5e-06	0.00026	21.4	4.6	1	23	189	212	189	212	0.97
3	12	2.8e-05	0.0021	18.6	3.2	1	23	217	239	217	239	0.98
4	12	3.6	2.7e+02	2.5	3.8	2	23	246	269	245	269	0.91
5	12	0.00062	0.047	14.3	3.9	3	23	280	301	279	301	0.95
6	12	0.0037	0.28	11.9	0.2	1	23	307	330	307	330	0.96
7	12	0.013	1	10.1	0.3	2	23	341	363	340	363	0.95
8	12	0.0011	0.082	13.6	0.4	1	23	392	414	392	414	0.97
9	12	1.6e-05	0.0012	19.3	4.6	1	23	421	443	421	443	0.96
10	12	0.00023	0.017	15.7	0.1	2	23	450	471	450	471	0.97
11	12	0.00051	0.039	14.6	0.8	1	23	478	500	478	500	0.99
12	12	0.00011	0.008	16.7	3.3	1	23	506	529	506	529	0.98

Sequence Information

Coding Sequence: atgGAAACTTGTCGTACCTGTGCGATTTCCATGTTTGTTTGCCatggcagcaacaattttcTGGACCTATTCCATCCCACCTGCTGGCAGAGTGAAATGGCCCAGATACGACTGGAGTTTGTCCACTGGAATCTGAAGATTTCTCCCAACGATGGATTGCCACAGAAAATATGCAGCGACTGTTTTACCAAGTTCTGCTCCATTTACACATTTCGACTGGGCTGCCAGGAAGCGCAGTTGAAGTTGTCGAACATTTATGACAAAATCGATGCCAGCAGCTTGGAGGATGAATGCcaggaaggggaaggggaacaTGAAGATGCGGAAGCTCCACTATAccaggatgatgatgatgatgatgccactCAGGAACTGACCATTAGCTTTGCTTGTAAGTTCTGCTTTAGGCCGCAGGAGAGCtaccagctgcagcagctgctgctggagcacATAAATGCCAGCCACGATCCAGAGCAGCCGTACAACTGTCCGGAGTGCGAGGAGTGCTTCCAGGATGCTGCCTCCCGGACTGTGCACCTCAAGAGCAGTCATGTGGAGAAGCAGTTCAAGTGCGAGGTGTGCGGCAAGCAGTACAGCGATCGGCACAACCTGCGCCATCACATCGAGAAGTATCACTCGGAGACGGACTTTGAGTGCACCATGTGCGAGAAGCGCTTCTTTACGCGCAAAAGCCTCAACTATCACATGAAGTGGCACAATCCGGAGCGCCAGCTCAAGTGCCGGCAGAGCGGCTGCGAGCGTTTGTTCATCAATCAGCGGCATCTGAAATGCCATGAGGCCACCCATACGGGCGCCAGTGCCAGGAAGAGCGAGCACTGTGGCTTCTGTGGTAAAACTTTCATACACCTAAAGACACTACGATGGCATATCTATAGACAGCATGGCGGGGAAAAGCCCTACAAATGCGCCAACTGCACGGAGGTGTTCGCCTCGTACGCGGAGAAAAGGATCCATATGCTGGAGCGGCACAGGGAGAACCTAACGCCCATTGAACGCAGCGAATGCATGTTGTGCCGCCAGCCCTTTGGCAGCGAGCAGGAGCTCATACATCACATGTCCGTGGATCACTTGCAGCGGGCGGCCAGTGCGCCAGTGATTGCCAACAATAAGCGTGTCCTGCAGCAGAAGCGAGAGCGTCAGTATTCGGGACTCTTTCAGTGCGACAGCTGCACCCAGAGATTCAATATGAAGTCGGCCCTGGATCGCCATGCCGCTGTCCATTCGGAGAAGGACAGGCCGCATGCCTGTCTGCACTGCTCAAAGCGTTTCAAACGGGCCCAGGACCTGAAGTGGCACATCAAGACGCACGAGAAGGAGAAGCCCAATGTTTGTGACGTGTGTGGCAAGGCCTTTGCCTTGAAGTATGTCCTCACACAGCATCGGCTCAGCCATGAAGTTTTGGAGAAGAACTTTAAGTGCAACGTTTGCGGTCGGGCCTATCTGTTTGAAAAGAGCCTGCGGCTGCATCAACGCATCCACACGGGCAACACCTACTACAAATGCGATCTGTGCCAGGAACGCTTCGTGACGCACATTAAACTGAAAACTCATATGCAGAAAATGCATGCACACGCATCTGAGACGCCTTCACCGGACTCCCTGGATGATTTGATAAAGATTGTGATTTCCTAA
Protein Sequence: METCRTCAISMFVCHGSNNFLDLFHPTCWQSEMAQIRLEFVHWNLKISPNDGLPQKICSDCFTKFCSIYTFRLGCQEAQLKLSNIYDKIDASSLEDECQEGEGEHEDAEAPLYQDDDDDDATQELTISFACKFCFRPQESYQLQQLLLEHINASHDPEQPYNCPECEECFQDAASRTVHLKSSHVEKQFKCEVCGKQYSDRHNLRHHIEKYHSETDFECTMCEKRFFTRKSLNYHMKWHNPERQLKCRQSGCERLFINQRHLKCHEATHTGASARKSEHCGFCGKTFIHLKTLRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTPIERSECMLCRQPFGSEQELIHHMSVDHLQRAASAPVIANNKRVLQQKRERQYSGLFQCDSCTQRFNMKSALDRHAAVHSEKDRPHACLHCSKRFKRAQDLKWHIKTHEKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRAYLFEKSLRLHQRIHTGNTYYKCDLCQERFVTHIKLKTHMQKMHAHASETPSPDSLDDLIKIVIS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00473982;
90% Identity: iTF_00575023;
80% Identity: -