g4892.t4
Basic Information
- Insect
- Drosophila pseudoobscura
- Gene Symbol
- kn
- Assembly
- GCA_009870125.2
- Location
- CM020869.1:8615971-8640225[-]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-233 8.4e-230 764.2 0.0 39 385 55 430 39 432 0.99 2 2 1.9e-07 0.00078 18.0 15.0 422 522 433 533 429 550 0.71
Sequence Information
- Coding Sequence
- ATGGAGTGGGGACGCAAGCTCTACCCTACCGCCGGGCCCCGGTCCGCCGGGGGCCTCATGTTCGGCCTGCCGCCCTCCGCCGCCGACATGAACCAGCCGCGGGGGCCCATGACCTCCCTCAAGGAGGAGCCGCTGGGCGGACGCTGGGCCATGCAGCCAGTCGTCGATCAGACCAACCTGGGCATTGGCCGCGCCCACTTTGAGAAGCAGCCGCCCAGCAATTTACGTAAATCGAACTTCTTTCACTTTGTGATCGCCCTGTACGATCGGGCCGGCCAGCCCATCGAGATCGAGCGCACGGCCTTCATTGGGTTCATCGAGAAGGACTCGGAATCGGATGCCACCAAAACCAACAACGGGATACAATATCGCCTGCAGTTGCTCTATGCGAATGGCGCCCGCCAGGAGCAGGACATATTCGTGAGGCTGATCGATTCCGTGACCAAGCAGGCCATCATCTATGAGGGTCAGGACAAGAATCCAGAGATGTGTCGGGTCCTGTTGACGCACGAAGTCATGTGCAGCCGCTGCTGTGATAAGAAGAGCTGTGGCAACCGCAACGAGACGCCATCGGACCCCGTCATTATTGATCGGTTCTTCCTGAAGTTCTTCTTGAAGTGCAACCAGAACTGCCTGAAAAACGCTGGCAACCCGCGGGACATGCGCAGATTCCAGGTGGTCATCTCCACACAGGTGGCCGTGGACGGACCCCTGCTGGCCATCTCCGACAACATGTTCGTGCACAACAACTCGAAGCACGGACGGAGGGCCAAGCGGCTGGACACCACGGAAGGTACAGGCAACACATCCCTGTCCATATCCGGTCACCCCCTAGCGCCCGACAGTACCTACGATGGTCTCTATCCGCCCCTGCCGGTGGCCACGCCCTGCATCAAGGCGATCTCCCCGAGCGAGGGCTGGACCACGGGCGGCGCCACAGTCATCATTGTGGGCGACAACTTCTTCGACGGCCTCCAGGTGGTCTTCGGGACGATGCTCGTGTGGAGCGAGCTGATTACCTCGCACGCCATCCGCGTCCAGACCCCGCCCAGGCATATACCCGGCGTCGTCGAGGTGACGCTCTCCTACAAGAGCAAGCAGTTCTGCAAGGGATCGCCCGGACGCTTCGTCTATGTCTCAGCTCTCAACGAACCCACAATCGACTACGGATTCCAGCGCCTGCAGAAGCTCATTCCGCGCCACCCCGGCGATCCGGAGAAGCTGCAGAAGGAGATCATATTGAAGCGGGCCGCCGACCTGGTCGAGGCCCTCTACTCAATGCCCAGATCTCCGGGCGGCTCCACCGGATTCAACTCCTACGCCGGACAGCTGGCCGTCAGCGTCCAAGACGGCACCGGCCAGTGGACCGAGGACGACTACCAGCGCGCCCAGTCGAGCAGCGTGAGTCCCCGCGGCGGCTACTGCAGCAGCGCCTCCACCCCCCACAGCTCGGGCGGCTCCTACGGCGCCTCGGCCACCACAGCGGCGGTAGCAGCCACGGCCAATGGCTATGCGCCCACACCCAACATGGGCACCCTCTCCTCCTCGCCGGGCAGCGTCTTCAACTCCACGTCAATGTCCGCCGTGTCGTCGACGTGGCATCAGGCGTTCGTGCAGCATCATCATGTGGCCGCCGCCCATCCGCACCACTATCCGCATCCCCACCAGCCGTGGCACAATCCGGCCGTGTCAGCAGCCACGGCGGCGGCCGTTTAA
- Protein Sequence
- MEWGRKLYPTAGPRSAGGLMFGLPPSAADMNQPRGPMTSLKEEPLGGRWAMQPVVDQTNLGIGRAHFEKQPPSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTEGTGNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPRSPGGSTGFNSYAGQLAVSVQDGTGQWTEDDYQRAQSSSVSPRGGYCSSASTPHSSGGSYGASATTAAVAATANGYAPTPNMGTLSSSPGSVFNSTSMSAVSSTWHQAFVQHHHVAAAHPHHYPHPHQPWHNPAVSAATAAAV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00517500;
- 90% Identity
- iTF_00517500;
- 80% Identity
- iTF_00574597;