Basic Information

Insect: Drosophila pseudoananassae
Gene Symbol: -
Assembly: GCA_018153035.1
Location: JAECXR010000045.1:1863129-1865099[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.1e-06 0.00022 21.3 1.5 1 23 373 395 373 395 0.98

2 7 0.00018 0.013 15.8 0.1 1 23 401 424 401 424 0.98

3 7 0.0063 0.44 10.9 0.5 1 23 430 453 430 453 0.90

4 7 3.6e-05 0.0025 18.0 5.8 1 23 476 498 476 498 0.98

5 7 1.4e-06 0.0001 22.4 0.6 1 23 504 526 504 526 0.98

6 7 0.006 0.43 11.0 0.4 2 23 532 553 531 553 0.96

7 7 0.0015 0.1 12.9 0.8 3 23 561 583 559 583 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.1e-06	0.00022	21.3	1.5	1	23	373	395	373	395	0.98
2	7	0.00018	0.013	15.8	0.1	1	23	401	424	401	424	0.98
3	7	0.0063	0.44	10.9	0.5	1	23	430	453	430	453	0.90
4	7	3.6e-05	0.0025	18.0	5.8	1	23	476	498	476	498	0.98
5	7	1.4e-06	0.0001	22.4	0.6	1	23	504	526	504	526	0.98
6	7	0.006	0.43	11.0	0.4	2	23	532	553	531	553	0.96
7	7	0.0015	0.1	12.9	0.8	3	23	561	583	559	583	0.92

Sequence Information

Coding Sequence: ATGAAATGTGTTGTGCCCGACTGCAGAAACGCTTTTGTAGGAAGGGCTAAGCGGGATCCAGAGCAGCAGCAGCCCATTGGTTTCTTCAGTTTCCCCAAGTGCCCGGAAACTTTCAAACTTTGGGTTGCCTTTTGCGGTTACGAAAATCCTCCCAAAATAAAGAATCCCTGCATTTGTATCGAGCACTTCAAGCAGGAAGATATAGAGGGGTCTCTCAAATTCGAAATGGGACTTGCCAAAAAACGAACCTTGCGACCTGGTGCTGTGCCTTGCATTAAAAATGTTCATCAAAGTGCCTCTGAAAGAGTACGCCTAGAAGGCATTCAACGGCGTGAGAACAAGCGGCTGGTGGAAGAGCTCCTGGCGGAGGACGAGGCCAAGGGCGACATTGAGCCAACACCTCCACACGAAGAAGAAGATGACCTTTTTGAGGATTCCTTTTCGGAGTATGATCCGGCAAAGATTAGGTGTCGCATCTGCTACCAGGATCTGATCAATGACTCTTCTGCCAAAGATCTCTTCGATGAGGCCAACAGCATCCTGCTCTTTCACATAGAAGTCATCAGCGGTGTCTGGATTAGCCAACTGGAAGGAGAGCCTCATATTATTTGCCAAACGTGCCAATCGTCACTCCACGATGCCATTGAATTCCGAGAAATGTGCGTAAACACGGAGCTGAGGATCTCCCAAGCAGTGCCCGAAATTGAAGTAACTGCAATCGCATCGGAGGATGTGGAAGAAGAATCCATTCCCCCAGAGCCCGACATAATCGCAAGCTTGGAGGATCAGCAAGAACCTCTTAAACCGGAAGTCACAGCCGAGTCTCCGCAAAAGGAACAACCCAAAGAAGAAGCTACAGAATCTGCGTCCCAAGATCCACTTAGTGTAACTCTGGGATCCCGGATTTTCAAGGAACTAATCGACCAATACACTGGTCAGCAGAAAACGAGAAACAGAACCAAAACGGGAGATCCGTCGCCGAAAACGACAAAACCTCCATCCAAACCTCGGAAAGCGTTAGTCCGTGAACCGAAACCAAGAAGAAGGGCTAATCCAAAGACCAAGGAGGAGAGGAATCTCATACGGCGCGCCCAACTTCGCGCCAAGCCGCCTAACTTTGTGTGTGACCAGTGCGGCCAGGCCTTCCGCATGTCCCACAACCTTCGAATCCATCAACTGCGCCACACCCGCACGAAGAACTATCAGTGCCCCGAGTGCCCGATGGCATTCTATGACGCCTACATGCGCAATATCCATGTCCGGGTACGACATCGAGGAGAGACTCCGTATTCGTGCCGCCACTGCCCTGAAACGTTTGCCTATGCGGGAGCTCGTCAAAAACACGAAAGCGAAGTCCACGGAGCTCCACCACGGATGATTGTCCAGCGCATTAATCCGAAACCCATGCCACGCAACGATGCGCCCCACTACTGCAAGTTTTGTCACAAAAGCTACGCCTCCCAATATGCCCTCCGGTGGCACTTGAAAACCCACACGGACGGCCTGAGCTACAAATGCGGGCAGTGCGAGAAGAGCTTTAATGATCCTGCGAAGCTGAAACGCCATGAGATGAGTCACGAGAAGAGGCCGCTGCAGTGCGATGTCTGCCTGAAGGGATTCTACCAGCGAACGCGGCTGAAGGAGCACGAACTAATACACACCGGCGAGCGTCCCTACTGGTGCGAGATCTGCAATGTTAACTTTCGGTACAAATACAACATGAAAACCCATGCCAATACCAAAATGCACCAGGACAATCTGCACAAAAAGAATAAGTCTATTGATGAATTAGTCGTTGAATAA
Protein Sequence: MKCVVPDCRNAFVGRAKRDPEQQQPIGFFSFPKCPETFKLWVAFCGYENPPKIKNPCICIEHFKQEDIEGSLKFEMGLAKKRTLRPGAVPCIKNVHQSASERVRLEGIQRRENKRLVEELLAEDEAKGDIEPTPPHEEEDDLFEDSFSEYDPAKIRCRICYQDLINDSSAKDLFDEANSILLFHIEVISGVWISQLEGEPHIICQTCQSSLHDAIEFREMCVNTELRISQAVPEIEVTAIASEDVEEESIPPEPDIIASLEDQQEPLKPEVTAESPQKEQPKEEATESASQDPLSVTLGSRIFKELIDQYTGQQKTRNRTKTGDPSPKTTKPPSKPRKALVREPKPRRRANPKTKEERNLIRRAQLRAKPPNFVCDQCGQAFRMSHNLRIHQLRHTRTKNYQCPECPMAFYDAYMRNIHVRVRHRGETPYSCRHCPETFAYAGARQKHESEVHGAPPRMIVQRINPKPMPRNDAPHYCKFCHKSYASQYALRWHLKTHTDGLSYKCGQCEKSFNDPAKLKRHEMSHEKRPLQCDVCLKGFYQRTRLKEHELIHTGERPYWCEICNVNFRYKYNMKTHANTKMHQDNLHKKNKSIDELVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00477549;
90% Identity: iTF_00539184;
80% Identity: iTF_00580012;