Dpse004863.1
Basic Information
- Insect
- Drosophila pseudoananassae
- Gene Symbol
- -
- Assembly
- GCA_018153035.1
- Location
- JAECXR010000027.1:2806416-2808620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.7e-06 0.00019 21.5 2.4 1 23 159 181 159 181 0.97 2 17 0.09 6.4 7.3 4.2 1 23 190 213 190 213 0.96 3 17 1.1e-06 8e-05 22.7 1.9 1 23 230 252 230 252 0.98 4 17 0.0015 0.11 12.9 2.9 1 22 258 279 258 283 0.94 5 17 1.1e-06 8e-05 22.7 1.9 1 23 300 322 300 322 0.98 6 17 0.00016 0.011 15.9 2.5 1 23 328 351 328 351 0.98 7 17 6e-05 0.0043 17.3 0.8 1 23 362 384 362 384 0.98 8 17 0.00013 0.0096 16.2 2.6 1 23 426 448 426 448 0.98 9 17 0.0034 0.24 11.7 0.4 1 20 454 473 454 475 0.95 10 17 5.1e-05 0.0036 17.5 0.8 1 23 487 509 487 509 0.98 11 17 4e-05 0.0028 17.8 2.8 1 23 515 537 515 537 0.97 12 17 9.6e-06 0.00068 19.8 0.7 1 23 551 573 551 573 0.97 13 17 0.0003 0.021 15.1 0.3 1 23 579 601 579 601 0.97 14 17 5.3e-05 0.0037 17.4 0.6 1 23 607 630 607 630 0.94 15 17 0.00013 0.0094 16.2 0.6 1 23 636 658 636 658 0.98 16 17 0.0031 0.22 11.9 0.5 1 23 664 686 664 686 0.98 17 17 0.0007 0.049 13.9 1.8 1 23 698 720 698 720 0.94
Sequence Information
- Coding Sequence
- ATGGCGCATCCTGCAGTTTTAAGGCACCACGTACCTATAAAAAGTGAGGCGATCGAAGAGGAGTTCATACTTGAGGAAGCGTTTATACAAGTTTCGGGCGAAAACGATGTGCTGGTCAATAGACTGCGGAGGAGTGAAGAGGAAGGCCCAGGATTCCAAAACAGCGGAATGAGAAACCTACAAGACACATTCCGGGTGAAAAACGAGCCTATTGATGAAGAGCTTTTGGCGTATGGGAGCTTGGAGCAGCCCCCCAGTCCAAGTGAGAGCATCCACTTTGAAACCATTATTAAGGAAGAGGTCCCAGAGCTTCCCACTGACTTCAACGGAAACGGCGACCATGTGAAGTTCGAGAGTGAAGAAAGCTTGCTCGAAAAAGTACGTGATAGAGATAGTAGCTCCCACGATGGCGAAGAGAACGTTGACGATGACGAGGACAACTACAACTACTCCGAGAACGAAGGCTCGGGTTCTTTTAGGTGCTCCCGTTGTCCGAAGAGCTTTAGATTTGCAAAGAACCTTAAGAAACACCTCAACGCTCACCCGTCTGACACGGGAAAGCGCATCTACAAGTGTAAACACTGCCAAAAGGCCTATTTGCAAAGAGCACGCTACCAAAGTCACCTTTTCACCGACCACAATGATGAGGATTCGGAACTAGAATATAACTCCGAAGAGGAAAAGATTTATAAATGCGCTCGTTGCCCCAAGACGTTCAAATATTTGTCAAACCTGCGAAAACACGCCCGGCTGCATACTGCCGGGCTTCCCTACAAGTGCAAACGCTGTAATATGACCTTCTCCCAAAAAGCACGTTACGAGACACATAAGCGTGTTTTCACCGACCACAATGATGAGGATTCGGAACTAGAATATAACTCCGATGAGGAAAAGATTTATAAATGCGCTCGTTGCCCCAAGACGTTCAAATATTTGTCAAACCTGCGAAAACACGCCCGGCTGCATACTGCCGGGCTTCCCTACAAGTGCAAACGCTGCAATATGACCTTCTCCCAAAAAGCACGTTACGAGACACATAAGCGTGTTCCCCATAAAGAGGATGGAACACCTATGGATCGCCCATTCAAATGCTCAAAGTGTGAGACAAGGTTTAAAACAGAAATCGAGTTGGTTCGTCACGCTCGCGGCCATAAGTCTAGGAAAATAGCCAGGGATAAGACATCCTTAGAGGAGGATGTGAGTACAGATTCGGAGGTATCGGAACAAGATTCCGTATATTTTATAAAGCATCTCGATGACGACGGTACATATAAGTACAAGTGCCGTGTTTGCAACAAGAGTATTAAATACAAGTGGAATTTCAAGAGGCACCTCCTTCTTCACGCTGAAAATATTCCTTATAAGTGCGACCGTTGCGACGGAACCTTTATCAACGAAAAACTCTACAAGAAGCACTTGTTGCTGATCAATCCTGATGGAAAGTGCCCGGCTCAATTTTTTCAGTGCACTCAGTGCCAGGCGACTTTTGCATCGAATGAATTTCTAATTCGCCACGTCCAGAGACATGACCCGAACTGGTGGCACGAATGTCTCATATGCCAGAAAACGTTTCAGAGCCCCGCCGCCCTCAAGAAACATCACAAAGTTCACATTTTTCCTAGAGAGCCGCCGAAGAAACCGGCGCTTTCACACTATTGCAGCGTTTGTTCGAAACCCTTCGCGTCAGCTCGGTACTTGTTGATACACATGCGGGTGCATACGGGCGAAAGGCCATTCCAATGCATTGAATGTGCGAAGAATTACAAACAGAAGGGCCAACTCGCTGTGCATATGCTTACCCATACCGGAGAGCGGAAGTACAATTGTGTAGAATGTACCATGTCGTTTATATACAAATCATCACTCAAGCGGCATGTACTTAACGTACATAGTAACGGGCGGCCGTTCGAATGTCCGGAATGCGATGAAACCTTTGCTTCCATGTATAGGATGCGTGAGCACAAGAAAACCCACACCACTGAGCGTCCTTACAAGTGCCCCGAATGCCCAATGTACTTCATATCGGAACATGGCCAGAAGGTGCATAGGCTGATTCACCTAAAACCACCTGTTGATCCTTCAGCTAAACGATTCCACTGCCCTCAGTGCCCCAAAACCTTTGCTAGGAAACAAGGGTTGAAGTTCCACACGATAGTCCATGAGATGCCCAGCTCTGCCAAAATAGAAGACGCAACCGAATCCTGA
- Protein Sequence
- MAHPAVLRHHVPIKSEAIEEEFILEEAFIQVSGENDVLVNRLRRSEEEGPGFQNSGMRNLQDTFRVKNEPIDEELLAYGSLEQPPSPSESIHFETIIKEEVPELPTDFNGNGDHVKFESEESLLEKVRDRDSSSHDGEENVDDDEDNYNYSENEGSGSFRCSRCPKSFRFAKNLKKHLNAHPSDTGKRIYKCKHCQKAYLQRARYQSHLFTDHNDEDSELEYNSEEEKIYKCARCPKTFKYLSNLRKHARLHTAGLPYKCKRCNMTFSQKARYETHKRVFTDHNDEDSELEYNSDEEKIYKCARCPKTFKYLSNLRKHARLHTAGLPYKCKRCNMTFSQKARYETHKRVPHKEDGTPMDRPFKCSKCETRFKTEIELVRHARGHKSRKIARDKTSLEEDVSTDSEVSEQDSVYFIKHLDDDGTYKYKCRVCNKSIKYKWNFKRHLLLHAENIPYKCDRCDGTFINEKLYKKHLLLINPDGKCPAQFFQCTQCQATFASNEFLIRHVQRHDPNWWHECLICQKTFQSPAALKKHHKVHIFPREPPKKPALSHYCSVCSKPFASARYLLIHMRVHTGERPFQCIECAKNYKQKGQLAVHMLTHTGERKYNCVECTMSFIYKSSLKRHVLNVHSNGRPFECPECDETFASMYRMREHKKTHTTERPYKCPECPMYFISEHGQKVHRLIHLKPPVDPSAKRFHCPQCPKTFARKQGLKFHTIVHEMPSSAKIEDATES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -