Basic Information

Gene Symbol
JARID2
Assembly
GCA_018150935.1
Location
JAECWR010000199.1:20007615-20015368[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.2e-22 1.1e-18 67.4 0.0 6 89 1491 1572 1486 1572 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCAAAAGACAACAAGCGTCGTCGTAAGGAGACGGAGACCCCGCCAACGTCATCGTCAGCGGCAGCGGCTGCAACTGTGGCTGTGGAGTCATCACCTGAGATGCCTAAAAGAACGAAGGTGCAGGCACAACGTAAATTCGCCCAGGGTCAAAGCGCACCCAGCTCAGCGACAGCTTACAGCGCTGTAGCAGCAGCGGCGGCGGCGGCAGCAGCGTCTTCTGGTGGTCCCAGCACATCGGCAGACAGCCATCAACCACCGATTGAGATACTGCCCAACAAGTGCCCCAAACCACAGGATTTTTTAACATTTCTCTGCTTTCGTGGCACATCCGCGCTACCCGCACACTTGGACTATCTGAATCAGGGGAAGCCGAAGCCCAACGAAGTGGTTCCGCCCAGCAGCAGTAGCAGCAACAACAACGACACCAACAAAAAGAAAAACAATAGCAACAACAAAAAGAAACGTGGAAGACCCGCCAAACAGTCAGCAACAGCGGGTAAAACTGTAGCAGAGCAACAGCAGCCAACGACGCAATCTCCGCCGACTCAGTTGCCGGCCAGTGATAAAATTGATGCTCCAATGCCAATGACATCACTGCTGCTGGCGGGAGCAGTGCGTAAGCGGGCAGAGGTTATAACAGAGGGCAACAGACGAGGCGGCCGACGCAACGAGACGCTGAAGCGACGCTCGAATCGCGCTGGCAACAAGGAGAAGGAAGATGAACCGGAGCAGCAGCAGAAGAAGCGTGAAAATGATGCCGAAGAGGAGGAAGACGATGACGAATTCTTTTCAGCGCACGATGCGAGTTCACGCAATGGAGCTGAAGAAACGTTGTCCAAGTCGGAGCCAACAACGATTGCGAAACGTGGTCGCCAACAAGCGGCTGCAACCAGAAAAACAGCCGTCGCATCACCAGCTGCCACGGATAGCAGTGTCACCAAGGACAAGGAGAAGGAGAAGGAGAAAGAAAAGGGGCCGGTGAAGCGTGTTCGGCAACGTGAATCACCCATTTTTATACCCTCACCCGAATCATCTGGCCGTATGACACGACAACGTGCTTTTTTTGAGCCAGTCAAGGTGGTGCCCAAGCAAGAGCCACCACCTGAGGAGGACGAGGAGGAGGATGAGGAAGACGAAGATGTAGCAGAGGAGAAGGAGGAAAAGCCGCCTCCGCCATCGGCGAAAAAAGTAACTGACTCAGGGACTGGAGGGAAGCAGCAACAGCTCAAGGAGAAGACCAACTCCAGCATATATGCCAAAGATGCTGCCAAACAGCAGCAGCAACTGGAGAATGGAGAACCGCAAAAGGCACTCAATGTGTTTGACTTCAGTTCCGACGACGAGCAGCCATTGGCCAAGTCCATTAAGCTGAAAAAGGGCGGCAAAAAAGGTGCAACCACAACAACAACAACAGCTGTGGCTGCGGCACCAGCAGCACGTGGACGCAAATCTGCTGGTGCTGGTGCAGCCAAGAAGCAGCAGCAACCACGTGAAGAGGAGAAAATGGAAACGACGCCAAGTAAGGCAGAGGAGCAGCCAAAAACGAAGCGTGGCAAAGCGTTGAAAAAGAAAGCTGAAGAGGAGCAGCCAGCCAATGAGCTGCCACTGGCGGAGGAGCAGCAAGAGGAGAAGGAGCTATCCAAGAAGCAGAGCAATAGCAATAGCAATCACAATGCACGTCCAGTGCGTCGCCAGGCGCAGGCAAAAGCTGCCAAAGGAGAGCGTTCAGTGAGTCCAAGTCCACAGCGCAGTCAGCGTCCGTCGCGTAAAACGAAGGAAGCGGCAGCCATTTACATGGGCATCATTGGACACAAACTGCAGCTGGCGGACGACGAGGACGATGATCTGTCGCTGAGCAGCTTTCCGGATATACCCAATGCGACGGCAGCTCCTGCACGACGTGGTCGTCCGCCGAAGCAGGCAAAAGGTGGAGGCGGTGCATCGACGTCCACAGGAGCAGCAAGTGGAGCAGGCGCAGCCAAGCCACAGATACAGATCGAGGGCATGCTGGTAAAAAAGGGTGCACTGGCGCTGGCCAAAGCCAAGTCCGAACAGCAACAACAGAAGCAGCAAAAAGTCGACTCCGATGCGGAGGAGGATTTTTTAATCAACGAGGAGCTAAACGAAACAAAACGCAAGCTGGAGAAGACGAAGCCCTCGCAGTTCTCCACCATATCGCCACCGAGCTATGCGCCCGCCGCCAGCTGCTTGAAGACCATGGAGAAGAAGTCGCCTGTGCCCACATCCAAGATTCTCAATGTGCCCGCCACATATGCGTTACCCGGCACTGGCGTCGGCGTCGGAGTGGGCGTGAGTTTCGCCAAGACCACGTCGTATTTGCCGCAAGCATCGCCGCATTATCATACGCCCTATGTGCGTCCATCGACATTCGCTGGCGGCGCTGCCGGCAGCAAGACGCCGCAACAGGGTGCGACCAGCATAGCGACAGCAGCAACAACGGTGTCGACGTCCCCTTTAAAGTATCAAACGCCACCCACCACTTATCCGCCACCAATTGAGGCGTATCAGTGTCCCAAGATCAATCCTAATTTTCTAACGCCCAAGTACGAACGGAGCAGCGTCTTGCCGCGCACCAACAACATCAACGTCAATATCAATGTCAATGCCAGCTACACGACGCCCACAACGGTGGCACGTGCCACACTGAGCACGCTCGGCACAGCCGGCACCTCCAGCGTGGCCACGCCCGTCAAGAGTGTGCTGCCTCCACCGGTGACAGCTAATAATGGTGCTGGTGCAGCAGCTGATCCGCTCAAGGATGAAATTGGAAGCATACTGGCGCAGGCAACCCTAATGCCCAGCAAGGAGGAGTCGGGCAAGATCTTTGGCATTGCCAGCGTTAGTCTCGCCCAAAGTTCTGGGCCGGACAACACCAAGTGTACGTTGGGCAAATGCGGTTCGATACACAAGCCAGTGCTGGGTCCAGTGGTGCCCACCGAGGGCTACTTTGGTGACCAGTTGACCAGCAAGGAGCGACGCAAGGCCAAGGTGAATATGACGCATGAGCAGATACAAAAATGGCTCATCGAGTGCAGTTCAAATCCGGATGAGATACAAGATGATCTCGACGATGAGTTCGATGATAGTGTGCGACCGCAACAGGCACAAACGCCGCCAGCGGCGACGACACGGGATGACAAGGAGAGCACCAGCTTTAGCAGCTCCTCGAACAAGACACGCGGTGAGCTGGGCAAGAGTGAGAGTGCCTGGTCGGCCAAAGGCCCGTCGCTAAAGGCGACGCCCGTGTTGGTAAGCACAGCGACAGCCGAAACGGATGCCCTGGACTTTGACAAGTGTGTGACACCGGTGAATCTCACACAGAAATCACAGCTGGATGCGGTGGTCAGCGATAAGAAGCTGGCCGACAAGAAGGCAACGTCGCTCCCAGTGAAAGCCACCACTTCGGTGTATGCCTTTGGCAAGGATGAGGAGTCAACGACAGCAACAGCAACAGTTGCTGCTGCTGGCACCGGCAAGGCAACCAATCGTCGACGCAATGCAGCCGACGTGGAGGCGGCAACAGCAGCAACGCCACCGCCTGCGCTCAGCGAGCGTTCGCCAACCAAGAAGCGGGCAGCGGCTGCAGCCGCGGCCACTGCAGTGCAGCTGACGCTGAGTCCTACGGATAAGCTGGAGAAGCCCAAGGCGACGGCGGCAGCAGCGCGCAAAAAGCAACAGCAGCTGGAGAAGCAACCGCAAGCGCAAACGGCAGCTGCCAGTCCAGTGGGCTCGGATGCCGAGGGTGCCACCTTCTATATACCGCTGCTGCAAGGGGCCAGCGGCGGGGAAGGCGGCATTCAGGGCGTGGCTGTTAAGCTGGGACGCGAGGGACCCGATGGACCCAATCAAAAGGTGGTTATGCAAGCCACCTTGGTGACCAAAGCACAGATGGACACCAACACAAAACCGTTGCCCGACAACGAGCTGGTCAAGACATTGCTCAATGCGGCGACCACAAGCAATGATGCCACCACAACGGCGGGCAGCAACAGCAACAAGGCGAGCACCTCGGCAGCTGCTGCAGCGGCCGCAACGGCCACAGCAACGGCAGCCACAAGTCTGGTGCGTGTCAATTCCAATTCATCGCTATTCTCCGGCTCCGCCAAATCACGAACAGCAGCAGCGGCAACGGCAGCACTGGCCAAGAAGTACAAGGATGATACACCCATCAAGATGGCCAATAACACGGCCTTTCCACGGCACGATGATCCCACGCAAATGGTCGAGGCGCCCATCTTTAGGCCCACCGAAAAGGAGTTTGCTGATCCCATCGAGTTCATCGAACGCATCACACCAATTGCTGCCCGCTTTGGCATCTGCAAGATTATACCGCCGGCTAGCTTTAAGCCCGAGTGTCGCATCTCGGATGAGATGCGTTTCACAGCCTACAATCAGTATGTGCACAAGATGCTGCATCGCTGGGGTCCCAGTGCCAAGGAGCTGAGTGCCATCAAAAAGTATTTGGCCACCCAAAGCATTGTGATGAATCATGCCCCCTGGATTGGTGGCATGGAGGTGGACTTGCCACGGCTCTATCACACAGTCCAGGAGCTCGGTGGCCTCAAAGAGGTCATCGAGAAGAAGAAATGGGCACGTGTGGCCGAGGAAATGTGCATACCCAAGTTGGCACAGGATCGCGTGACCAAGCTGGATGACATCTATTGCAAGTACTTGCTGCCCTACGACACCTTGTCGCCGGCGGAGCGCCAGAAACTCTTCGATGAGGTCGAAGCGGATTGGGCAAAACGTGAGGCGAGAGCGCGACGCAATGCAGATCGATTTGTCAACAGCACCGAGAGCGTCTCGAACGAGGAGGATGACGTATCCACCGATGAGGATGAGGAGTCCGAGGAGGAGATCGATGGTGTGTCCATGGAGTGCATTGTCAAGGGTCGCAGCATGCCGCTCAGTCAATTCTATCGCATAGCACGCAACACCATGGCGCTATGGTTCAAGAGCACCGATCCCACTGTCAACGAGGTGGAAGCGGAGTTTTGGCGGCATGTCGCCGTCCGTGACAGTCATGTGTGTGTGCATTCCGGCTCCATTGATAGCTCTGGCTGGGGTTATGGTTTTCCCAGTCCGGGACCCAAGGGCAAGGGCTCCAATTATGCGCGGCATCCGTGGAACCTCAAGGTGTTGACCAACAATGCTGGCTCTGTGCTTCGTTCGCTGGGTCCGGTCATGGGTGTCACGGTACCCACACTGCATGTGGGCATGCTATTCTCTGCCTGCTGTTGGTATCGAGATCCGCATGGCTTGTCCTGGATCGAGTATCTGCACACTGGCGCCTCCAAACTGTGGTATGGCATACCCGACGATCAGAGCGCCAATTTTCGAGCGGCATTGACGTCTTTGATACCGACGCACTGTCAGAACAAGACGATTTGGCTGCCCTGTGATACGGTGATGGTGCCACCGCATATGCTCACCGATCGAGGCGTCTCCTTGTGTCGCATCGAGCAGAAGCCTGGCGAATTTATTGTGGTTTTTCCACGCGCCTACACCTCTAGTTTGGCCACCGGCTATGTGGTCTCGGAGAGCGTTTATTTTGCCACCATGTCGTGGCTGGATTTGGCCAAGGATGACTTTAGGGACATTCATGAGAGCTGTGAACCGGCCATGTTCTCGCTGGAGCAGCTACTCTTTGCCTTGGGCTACGATCAGCGCGTCAACTCGGACACATTGCAGCAGATGCTGCCCATGCTGAATGAGGTCTGCGAAAAGGAGTCGGCCGCACGGGAGCAGCTAAGGGCCGCTGGTGTAACATCCACCGAGAAGGTGCAGGCGGAGAAGGGACAAAAGGCGAAAAAGCAACAGCAGCCGCCGTACAAATCCATAGAGAGTGAATGTGATCTGTGCCGTGCCAATCTGTACATATCGATGGTTCGCACCGAAGAGGGCAATGTCTACTGTTTGCAGCACGCGCTCAAAAATCTCAACAACGGTAACATTCAAGCAAAACAATGCAAACTGATTTATGCATATAATGTGGACGATATACTGCAACTGATACGCCAGCTTCAGGAGAAGATACAGCACAAGCAGACGGTTAAGAAAAAGTAG
Protein Sequence
MVVSKDNKRRRKETETPPTSSSAAAAATVAVESSPEMPKRTKVQAQRKFAQGQSAPSSATAYSAVAAAAAAAAASSGGPSTSADSHQPPIEILPNKCPKPQDFLTFLCFRGTSALPAHLDYLNQGKPKPNEVVPPSSSSSNNNDTNKKKNNSNNKKKRGRPAKQSATAGKTVAEQQQPTTQSPPTQLPASDKIDAPMPMTSLLLAGAVRKRAEVITEGNRRGGRRNETLKRRSNRAGNKEKEDEPEQQQKKRENDAEEEEDDDEFFSAHDASSRNGAEETLSKSEPTTIAKRGRQQAAATRKTAVASPAATDSSVTKDKEKEKEKEKGPVKRVRQRESPIFIPSPESSGRMTRQRAFFEPVKVVPKQEPPPEEDEEEDEEDEDVAEEKEEKPPPPSAKKVTDSGTGGKQQQLKEKTNSSIYAKDAAKQQQQLENGEPQKALNVFDFSSDDEQPLAKSIKLKKGGKKGATTTTTTAVAAAPAARGRKSAGAGAAKKQQQPREEEKMETTPSKAEEQPKTKRGKALKKKAEEEQPANELPLAEEQQEEKELSKKQSNSNSNHNARPVRRQAQAKAAKGERSVSPSPQRSQRPSRKTKEAAAIYMGIIGHKLQLADDEDDDLSLSSFPDIPNATAAPARRGRPPKQAKGGGGASTSTGAASGAGAAKPQIQIEGMLVKKGALALAKAKSEQQQQKQQKVDSDAEEDFLINEELNETKRKLEKTKPSQFSTISPPSYAPAASCLKTMEKKSPVPTSKILNVPATYALPGTGVGVGVGVSFAKTTSYLPQASPHYHTPYVRPSTFAGGAAGSKTPQQGATSIATAATTVSTSPLKYQTPPTTYPPPIEAYQCPKINPNFLTPKYERSSVLPRTNNINVNINVNASYTTPTTVARATLSTLGTAGTSSVATPVKSVLPPPVTANNGAGAAADPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLTSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDEFDDSVRPQQAQTPPAATTRDDKESTSFSSSSNKTRGELGKSESAWSAKGPSLKATPVLVSTATAETDALDFDKCVTPVNLTQKSQLDAVVSDKKLADKKATSLPVKATTSVYAFGKDEESTTATATVAAAGTGKATNRRRNAADVEAATAATPPPALSERSPTKKRAAAAAAATAVQLTLSPTDKLEKPKATAAAARKKQQQLEKQPQAQTAAASPVGSDAEGATFYIPLLQGASGGEGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNTKPLPDNELVKTLLNAATTSNDATTTAGSNSNKASTSAAAAAAATATATAATSLVRVNSNSSLFSGSAKSRTAAAATAALAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHAPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNSTESVSNEEDDVSTDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDTLQQMLPMLNEVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEEGNVYCLQHALKNLNNGNIQAKQCKLIYAYNVDDILQLIRQLQEKIQHKQTVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-