Basic Information

Gene Symbol
JARID2
Assembly
GCA_037075205.1
Location
JBAMCJ010001264.1:492702-500902[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-22 1e-18 67.7 0.0 6 89 1816 1897 1811 1897 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCCAAAGACAACAACAAGCGTCGCCGCAAGGAGACGGAGACGCCCCCGCCGCCTCCGCCCGTCCCGCCCACCGCCTCCTCACTGGCTCCTCCTGCGGCGGTGGCGGCCATTGAGTCCTCCCCCGAAATGCCCAAGAGAACGAAGGTCCAGGCCCAGCGGAAGTTCGCCCAGGGACAGAGTGCGCCCAGCAGCTCCTCGAGCATCGCCTacagcgcagcagcagcggcggcagctggAACCGGATCCGGGCCCAGCACCTCCGGAGCGGATAGCTCTCAGCCGCCCATCGAGATCCTGCCCAACAAGTGTCCCAAGGCGCAGGACTTCCTCACCTTCCTCTGCTTTCGCGGCACTCCGGCGCTGCCCGCCCACTTGGACTTCCTCAACCAGGGCAAGTCCAAGGATGCGGAGGCCACCTCGGCGGGAgccaataacaataacaatgccAAAAAGGCCAACAACAGTCGAGCGGGCCTGACAGCAGCAGGCAACAAAAAGAAGCGGGGACGTCCGGCCAAAGGAGCCGGCAAGAAGGCGGAAGCGGTAGACCTTGCACCCGAACCCGCTGAGAAACCCTCGACAGCAGCAGAAAAAGCAGCCAGTGATAAAACCAATCTCATTGCAGCCGGAGCGCCCGAGACTCCGTCGCCTACTCCTACTCCTGTGCTGCCAGGAGCGGTGCGCAAACGAGCGGAGGTCGTCACCGATGGCAATCGACGTGGAGCCAGAGGCAGGCTGGCAGCCGGAGCAGGTGTTACCCCAGAGAAggctggagcagcagcagcatcatccAACGATAACAAGCGGCGCTCTAATCGCGCAAGCACCAAGGAAAGTAAGCCCATTATAGACGATGACCATTCGGAGGACTTCGAGGAACAAGAAGCcgatgaagatgaagatgagTTCTTCTCCGCTCACGATGCCACCTCGCGAAACGGGGAGGAAGTCAAGGTAGACAGTCCGGTGAAGGCAGATCCACCCACCAAACGAGGACGACCGGCGGCGGGCAAAAAAGCTGCGGAGCCCACACCATCGGAAGCCGCTCAGGCTGCTTCGAAGGACAAGGCGCCCGTGAAGCGTGTTAGGCAACGGGAGTCACCCATTTTTATACCTTCACCCGAGTCCTCTGGTCGCATGACAAGACAGCGGGCTTTTTTCGAGCCCGTTAAGGTTCCTCCCCACCAGGAGGAACCTGCAGTCCCGGAGCCGCCAAAGGAGGAGCCCAAAAAAGAACCTGAACCGCCAGCTAGCAAACCGGAGAAGGAGCCAGAGCCTGCTAAGCAGCTAAAGGAAGCCAAGGAGAAGACGAATTCCAGTATTTATGCCAAAGACGCCAAGCAGCAGCTGGAGAACGGAGATAGCGGCCAGCATGGAGCGGCGGCCAAGGGCAAGAAAAGCTTAAATGTCTTCGATTTCAGTTCAGATGACGAGCAGCCGCTGGCCAAGTCCATCAAGCTGAAAAAGGGCGGCAAGGGGACGAGTCCAAAGAAAGGTgcggctgctgcagttgctccggCCGCCAGGAATCGCAAGGCAGCAGCTAAAAGGCTggagaaggaaaaggaaacggaaaagcaaatggaaaaggaaaaacagaaGGAAAAGGACAAAGAAATAGAAAAGGCCAAGGAAAAAAGGGACAAGGaaaaggagaaggaaaagGAGCCTGTGCCAGAAAGCAAAGTGGAGGAGCCACCCAGTGGCGGGAAAAGAGGAAAAGGTGGTAAAAAGAAAGCAGAGGACGCTCCAGCCGATGAGCAGGAGTTGGCACCACCCTCCTCCAAGAAGGTAGCCACCAATGCCCGCGGATCTCGGAAGACGGCCAAAAGCAAGGCTTCCGAGGATTCTGCTGAGCTTGAGCCTCAGCGAACGCAGCGACCCTCTCGCAAAACCAAGGAGGCTGCTGCCATCTACATGGGCATCATAGGCCACAAACTCCAGCTGGCCGATGACGAGGAGGACGACCTGTCCATGAGCAGCTTCCCCGACATACCGAACGTCAAGGAGATGGAGAAGATGGAGAACGAGATCAAACGGAATGCGGCGGGAAAGTTAAACGTGCCGGAGGCCACGACGGTGCCTTCGGCAGGCAAATCATCCCGTAAGCCGTCGCCCCGACCCAAGGATTCGCCAGCAGCTATTGCTCCGGTGGAAGCCAATCGTGATGAGGTCCCCGCCTCGCCAGAAGTCGAGGAGGAAAAGCCACCGCCCCCAGCCCGACGTGGACGTCCCCCCAAGCTGGGCAAGGCATCTGTTACCGCCCCACCCCCCAAACCGCCCATCGAGGGCATGCTGGTGAAGAAGGGCTCGCTGGCCAAGATGTCTGAGCAGCAGGCCAAGCCCAAAGCCAAGTCCGAACATTCAAAAGTCGACTCCGACGAGGAGGAAGACTTTCTCATCAACGAGGAACTGAACGAAACGAAGCGAAAGCTAGAGAAGAGTTTCAGTGACTCGGACGATGAACCATTGGCCATCAAGGTGCCtgtggtggcggcggcggccaaggAGAAGGAAGTCTCGCCGCCAAAGATGCCCAGTCCGCCGCCCAAACTGGCGGTGGCCGTTCCATCGCCCATCTCTGTGCCCACGCCCTCCGTTTCGGTGGCTCCATCGCTGGCTGTGCCCAGTCCACAACCGCCCACCACTAGCACCACCCAATTGACCATGCTACCCTTGACGGCCAAGGCTACGCCAACGCTGGGCGCCATGCCGATGTTTCCATGCATGCCTGCCAGCTATTCGCCGCTCAAAACGATGGAGAAGAAGCCGCCGGTGCCCACGTCCAAGATTCTGAACGTACCCGCCACCTATGCGCTGCCGGGAAGTGCTGGTGGGCCTGTGGGCTTCCAGAAGACCTCGTCGTATCTGCCGCAGGCATCGCCCCACTACCATTCCGGCTATGTGCGTCCACCACCGACGCCCACCCATCAGTTTGGAGGCGGAGCGCCGTCGGGGAGTAAGACTCCCTCCCAGGGCTCCTCGCCGCTGAAATACCAGACGACACCGACCACTTATCCGGCGCCCATTGAGGCGTATCAGTGTCCCAAgattaatcccaactttctgaCGCCCAAGTACGAGCGCAGCCCACTGCCAAGATCGTCGACCAGCAGCTTTCCCAGCCCTTCGCCGGTTAAGTTTCTGCCCACATCGGGAACCACGGCCACCACAGTGGGCACACCCTCGTCGGCCACCAAGAGCCCGTTGGCACCGCCGCCACCATCTCCGCCAGTCAGTCAGGTTGTGATCCAGACGTCCAGCTTGAATCTTAGCATGAGCATTGCAGCCACAGTGAATGCAGCACCCATGGCTGTGGCCTCCACGTCGTCGGCAGCAGCGGCCCATCAGGCGACCGTCGGAGCCGCCGTAGCAGCCACGTCGACGCCACCGCCCGCGCACAGCAATAGTGCGGGAACGGGAGGAGCCGCCGGTGCGAATTCCGATCCCCTGAAGGACGAGATCGGGAGTATCCTGGCGCAGGCCACACTGATGCCAAGCAAAGAGGAGTCGGGCAAGATCTTCGGCATAGCCAGCGTGAGCTTGGCCCAGAGTTCCGGGCCGGACAACACCAAGTGCACCCTGGGCAAGTGTGGATCCATCCATAAGCCTGTGCTGGGACCGGTGGTGCCCACGGAGGGCTACTTCGGCGACCAGCTGTCCAGCAAGGAGCGGCGCAAGGCCAAGGTGAACATGACGCACGAACAGATTCAGAAATGGCTGATTGAGTGCTCGTCCAACCCGGATGAAATCCAAGACGATTTGGACGATGACTTCGACGATAGCTTGAGACCCCAGCAATCCACCACACCGCCTCCCACGAGAGACGATAAGGAGCTGAGTGCGAGCTTCAGTTCGTCATCGAAGAATACGCGCGGCGATCTCGGAAAGAGTGAGAGTGCCTGGTCGGCCAAGGGACCGTCGCTGAAGGCCACGCCTGTGCTGGTCACTCCGCCCAGTCgcaaggagcagcaggagcaggcggATGGCAAGGACTGTGATGTCTTGGACTACGACAAATCATCGACACCTGTCAATCTTACCCAGAAGATCGCATCCAATGAGTCGGCGGCGGTTGAAAAGAAGGTCAACGATCGGAAGAGCAAAGAGTCGATTAAGGCCGCTGCATCCAAGGCTGCTACCCAGCCAAGAAGTGCTGCTGCCACTCCACCAACACCTATTTCATCTACACCCACTCCCGTGTCGCTCACTCCATCCAAGAGCAGTCCCACTCCACCGCCGGCTGTCAAGCAGAAACCGGAGAAGGGCAAGAAAAATGCCACTGCTGGTGGCGGAGCAACTGCAATAGTTTCACCGCCCCCTGCACCCACTCCTGCACCCAATACCAAGCGAACGCCTGTGTACAACCAGAAGAACGCCAaggcacagcagcagcagcaacaggcggAGACCAAGCCAGCAGCTAATCCGCCAAGCGGAGCAGGAACCAAACGGGAATCGGTCTATGCCTTCGGCAAGGAGGAAGAGGCAGGCACCAAGCCGGGCAATCGACGCCGGGCGGAGCCCAGTCCAGTTCCCGCCCCGGCTCCCGTTTCCAATGCGCTAAGTGAGCGATCTCCAACCAAAAAGCGAGCTGCAGCCGCAGCGGCAGCCACGGCAGTTCAACTAACGCTGAGTCCCACGGAAAACTGCAAGATCGAGGGCAAACCCAAGGCGGCAACGGGAAGAGGAGCcaaaaagcaacagcagccggCTCCAGCTCCACCTGCACCTGCAACTGCAGCACCTCCCGGAGTGGGAGGCAGCGGCGATGGCGGCATACAAGGAGTTGCTGTGAAACTGGGACGAGAGGGTCCCGATGGCCCCAATCAAAAGGTGGTGATGCAGGCCACTTTGGTGACCAAAGCGCAGATGGACACCAATTCGAAGCCGCTTCCCGAGTCGCTGAATACCAATGAGCTGGTGAAGACCTTGCTGCATGCGGCCAGTAATGATGCGGCCTCAACGACCACAAGTCTCAAGAGTTTGCCCAAGGCGAGCACTTCGGCAGCAGCGGGTGCAGCAACTGCACCTGGTGCTTCTAGCTTGGTGCGTGTCAACTCCAACTCGTCGCTGTTCTCCGGTTCGGCCAAATCCCGTACAGCTGCTCAGACGAGCTCCACGGCAGCGGCCGTGGCCAAGAAGTACAAGGATGACACGCCCATTAAGATGGCCAACAATACGGCCTTCCCGCGACACGATGATCCCACCCAAATGGTTGAGGCGCCCATCTTCAGGCCAACGGAGAAGGAGTTCGCCGATCCCATTGAGTTCATCGAGCGCATCACACCGATAGCAGCACGGTTCGGCATCTGCAAGATCATTCCGCCGGCCAGCTTTAAGCCGGAATGCCGGATCTCGGACGAGATGCGCTTCACGGCCTACAATCAGTATGTGCACAAGATGCTCCACCGCTGGGGACCGAGTGCCAAGGAGCTGAGTGCGATCAAGAAATACCTGGCCACCCAGAGCATTGTGATGAATCATCCACCTTGGATCGGTGGAATGGAGGTGGATCTGCCGCGCCTGTATCACACGGTCCAGGAGCTGGGAGGCCTGAAGGAGGTGATCGAAAAGAAGAAGTGGGCTCGCGTGGCCGAGGAAATGTGCATACCCAAGCTGGCCCAGGATCGGGTTACCAAGTTGGACGACATATACTGCAAGTACCTGTTGCCTTACGATACCTTGTCGCCGGCGGAGCGCCAGAAGCTCTTCGACGAGGTGGAGGCCGACTGGGCCAAGCGGGAGGCACGAGCGCGTCGCAATGCGGATCGTTTCGTGAACACGGAGAGCGTGTCCAACGAGGAGGACGATTTGAGCAgtgacgaggacgaggagtcCGAGGAGGAGATCGACGGCGTGTCCATGGAGTGCATCGTGAAGGGCAGGAGTATGCCGCTCAGCCAATTCTACAGGATTGCCCGGAACACGATGGCGCTGTGGTTCAAAAGCACCGATCCCACGGTGAATGAGGTGGAAGCGGAGTTCTGGCGCCATGTGGCCGTCCGGGATAGCCATGTGTGCGTCCACTCGGGCTCCATCGATAGCTCGGGCTGGGGCTATGGCTTCCCCAGTCCCGGTCCCAAGGGCAAGGGTTCCAACTATGCCAGGCATCCGTGGAACCTAAAGGTGCTGACCAACAATTCCGGCTCCGTTCTGCGCTCCTTGGGCCCCGTCATGGGCGTCACCGTTCCCACGCTCCACGTGGGCATGCTGTTCTCCGCCTGCTGCTGGTACAGGGATCCGCATGGCCTGTCCTGGATCGAGTACCTTCACACCGGTGCCTCAAAGCTGTGGTACGGAATTCCCGACGATCAGAGTGCGAATTTCCGATCTGCCCTGACGTCGCTGATCCCGACGCACTGCCAGAACAAGACAATCTGGCTGCCCTGTGATACGGTGATGGTGCCGCCGCACATGCTCACGGATCGAGGGGTATCCCTGTGTCGCATCGAGCAGAAGCCGGGCGAGTTTATTGTGGTGTTCCCGCGGGCCTATACATCAAGCTTGGCCACAGGCTATGTAGTTTCCGAGAGCGTTTACTTTGCCACCATGTCCTGGCTGGATTTGGCCAAGGATGATTTCAGGGACATTCATGAGAGCTGTGAGCCAGCCATGTTTTCGCTGGAGCAACTGCTGTTTGCCTTGGGCTATGACCAGCGTGTCAACTCCGAGGCACTGCATCAAATGCTGCCAATGCTAAATGATGTTTGCGAGAAGGAATCCGCAGCCAGAGAGCAACTTAGGgCTGCTGGCGTAACATCCACCGAAAAAGTGCAGGCTGAGAAGGGCCAGAAGGCCaagaaacagcagcagccgccatACAAGTCCATCGAGAGCGAGTGCGACCTGTGCCGCGCCAACCTGTATATATCGATGGTGCGCACCGAGGACGGCAACATCTATTGCCTCCAGCATGCGCTGAAGAACCTCAACAACGGCAACATCCAGGCCAAGCAATGCAAGCTAATCTACGCCTATAACGTGGATGATATACAGCAGCTAATCCGCCAGCTGCAGGAGAAGATCAACCATAAGGCGGCGGTAAAGAAAAAGTAG
Protein Sequence
MVVSKDNNKRRRKETETPPPPPPVPPTASSLAPPAAVAAIESSPEMPKRTKVQAQRKFAQGQSAPSSSSSIAYSAAAAAAAGTGSGPSTSGADSSQPPIEILPNKCPKAQDFLTFLCFRGTPALPAHLDFLNQGKSKDAEATSAGANNNNNAKKANNSRAGLTAAGNKKKRGRPAKGAGKKAEAVDLAPEPAEKPSTAAEKAASDKTNLIAAGAPETPSPTPTPVLPGAVRKRAEVVTDGNRRGARGRLAAGAGVTPEKAGAAAASSNDNKRRSNRASTKESKPIIDDDHSEDFEEQEADEDEDEFFSAHDATSRNGEEVKVDSPVKADPPTKRGRPAAGKKAAEPTPSEAAQAASKDKAPVKRVRQRESPIFIPSPESSGRMTRQRAFFEPVKVPPHQEEPAVPEPPKEEPKKEPEPPASKPEKEPEPAKQLKEAKEKTNSSIYAKDAKQQLENGDSGQHGAAAKGKKSLNVFDFSSDDEQPLAKSIKLKKGGKGTSPKKGAAAAVAPAARNRKAAAKRLEKEKETEKQMEKEKQKEKDKEIEKAKEKRDKEKEKEKEPVPESKVEEPPSGGKRGKGGKKKAEDAPADEQELAPPSSKKVATNARGSRKTAKSKASEDSAELEPQRTQRPSRKTKEAAAIYMGIIGHKLQLADDEEDDLSMSSFPDIPNVKEMEKMENEIKRNAAGKLNVPEATTVPSAGKSSRKPSPRPKDSPAAIAPVEANRDEVPASPEVEEEKPPPPARRGRPPKLGKASVTAPPPKPPIEGMLVKKGSLAKMSEQQAKPKAKSEHSKVDSDEEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPVVAAAAKEKEVSPPKMPSPPPKLAVAVPSPISVPTPSVSVAPSLAVPSPQPPTTSTTQLTMLPLTAKATPTLGAMPMFPCMPASYSPLKTMEKKPPVPTSKILNVPATYALPGSAGGPVGFQKTSSYLPQASPHYHSGYVRPPPTPTHQFGGGAPSGSKTPSQGSSPLKYQTTPTTYPAPIEAYQCPKINPNFLTPKYERSPLPRSSTSSFPSPSPVKFLPTSGTTATTVGTPSSATKSPLAPPPPSPPVSQVVIQTSSLNLSMSIAATVNAAPMAVASTSSAAAAHQATVGAAVAATSTPPPAHSNSAGTGGAAGANSDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDSLRPQQSTTPPPTRDDKELSASFSSSSKNTRGDLGKSESAWSAKGPSLKATPVLVTPPSRKEQQEQADGKDCDVLDYDKSSTPVNLTQKIASNESAAVEKKVNDRKSKESIKAAASKAATQPRSAAATPPTPISSTPTPVSLTPSKSSPTPPPAVKQKPEKGKKNATAGGGATAIVSPPPAPTPAPNTKRTPVYNQKNAKAQQQQQQAETKPAANPPSGAGTKRESVYAFGKEEEAGTKPGNRRRAEPSPVPAPAPVSNALSERSPTKKRAAAAAAATAVQLTLSPTENCKIEGKPKAATGRGAKKQQQPAPAPPAPATAAPPGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPESLNTNELVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAATAPGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEDGNIYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKINHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00491299;
90% Identity
iTF_00505189;
80% Identity
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