Dper013422.1
Basic Information
- Insect
- Drosophila persimilis
- Gene Symbol
- -
- Assembly
- GCA_003286085.2
- Location
- NW:14853019-14858245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.7e-06 0.00043 20.2 4.8 1 23 152 174 152 174 0.97 2 16 5.5e-06 0.00031 20.7 2.5 1 23 180 202 180 202 0.99 3 16 4.3e-05 0.0024 17.9 2.9 1 23 208 230 208 230 0.98 4 16 1.5e-05 0.00087 19.3 2.2 1 23 236 258 236 258 0.99 5 16 1.2e-07 7e-06 25.9 2.2 1 23 264 286 264 286 0.99 6 16 8.1e-08 4.6e-06 26.5 4.1 1 23 292 314 292 314 0.99 7 16 2.2e-06 0.00012 22.0 1.8 1 23 320 342 320 342 0.99 8 16 2e-05 0.0011 18.9 0.3 1 23 348 370 348 370 0.99 9 16 0.0025 0.14 12.4 0.9 1 23 378 400 378 400 0.99 10 16 7e-05 0.0039 17.2 0.8 1 23 408 430 408 430 0.99 11 16 6.9e-08 3.9e-06 26.7 2.3 1 23 436 458 436 458 0.99 12 16 1.4e-06 8e-05 22.5 3.4 1 23 464 486 464 486 0.99 13 16 7.9e-06 0.00044 20.2 7.2 1 23 513 535 513 535 0.98 14 16 2.1e-06 0.00012 22.0 5.6 1 23 541 563 541 563 0.99 15 16 3.5e-06 0.0002 21.3 5.1 1 23 569 591 569 591 0.98 16 16 4.3e-06 0.00024 21.0 0.9 1 23 597 620 597 620 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAAATATGCAGAGTTTGCATGGGAACGTCCGGAGAATTCAGGAACATTTTTGACGAAAGACCAACAATGGATACGTGCATTGGTGACATGATATCGCAGTGCACAGGGAGGATGGAGGAAATATGCAGAGTTTGCATGGGAGCGTCCGGAGCATTCAGGAACATTTTTGACGAAAGACCTACAATGGATATGTGCATTGGTGACATGATATCGCAGTGCACCGGGTACGTGGTAAAGCGAGGGGACTCACTACCAGAAAACATATGTCTCCCTTGTCTGGAGGATGCTATGAGTGCCTTCAATCTTAAGTCCACCTGTGAGCAGAACCATACATTCTTTTTAACGCTGATGGACAAGGATAAGGACGTTTGGCTACATTCAGATGACAGAACTGAGCAATCGAAACATCAAGATGATAGCAATAACAGTGATAATTGTGAACGACTCTTCAAATGCTCCGTCTGTCCAAAGTCCTTTCCAAGAAAATCCCACCTCACTGAGCACAGCCATAGTCACACTGGGGAGCGACCGTACACGTGTCCACACTGCGCGAAGTCATTCTCTCAATCCAGAATTCTTCGGAATCACATCCGTACTCACACAGATGAGCGATCATTCTACTGCGCCCACTGTTCGAAGTCATTTAAACTGAAAGGCCAGCTAATCGTACACAGCCGTACTCACACAGGGGAGCGACCTTACAAGTGTTCCTACTGCGCGGTGTCGTTTAAACAGCTCGCCCATCTTACCTCACACGTACGCTCCCACACAGGAGAAAGACCCTACAAATGCTCTCACTGCCCAAAAACCTTCACACAAGTGCCCAATCTTAATATGCACATTCGCACGCACACGGGTGAAAGACCCTACAAGTGCACCGAATGCTCAAAGTCTTTTGTACAAAACTACCATCTCAAGGAACACATCCGCACGCACACTGGGGAGCGACCATTCAAGTGTACGCAGTGCCCCAAGTCCTTTCAAAAAAATGCAAATCTTCTTGAACATACCCGTACTCACACGGGGGGGCAACCATATCAATGTCCACAATGTCCAAAAACCTTTCTTGCTCGAGCGTATCTTAAAATTCACATACGAACTCACACTCGCAACGCAGAGCTACCGTATAAGTGTTCTCACTGCTCTGACACCTTTGCCCAAGTGGGAATTCTCCAGGCTCATATGCGTTCGCATACGGATGAACACGAACGACCTTACCCATGTCCCCACTGCTCCGAATGGTTCAGCTTGGAAGATAACCTGAAGACTCACCTCCGAACGCACATGGGTGAAGGACCCTACCAATGCAACGAATGCTCAAAGTCTTTTATACAAAAATACCTCTTTGAAAGACACATCCGTACGCACTCAGATGATCGACCCTACCAGtgctctcagtgctccaagTCCTACAAACAAAAGGCCCATCTCAGCAGTCACATACGGGTTCACACTGGGGAGAATAACGACATTTCTAGTGTTTCCACTGGAGAAGAGACCCAATCGAAGCCTCTTGAAGTGGAGGGACCCCATAAATGCTCTCACTGCTCGAAGTCATTTAAGATACAATCCCATCTCCAAATACACATCCGTGTTCACACGGGAGATCGACCGTATAAGTGCTCTGACTGCTGGATGTCGTTTAAACAACACTCCCATCTTCGAATGCACATACGCTCCCACACAGGTGAAAGACCCCACCAATGCTCCCAATGCTCAAAAGCCTTCTCAGAAGAATCCAATCTTAGAAGACACATGCATACGCACACAGATAAACGACCGTTCCAATGCTCCGAATGCCCAAAGTCTTTTATAAGAAAAGCCCGTCTTGAAAGACACAAAGAAAAAGACCATCTCAACGAACACATACCTGCTCATACTGGAGAGATAATCGATCCATCTGGTGCACCCACTGCGATTCCAGACATCAACAGCATTTAA
- Protein Sequence
- MEEICRVCMGTSGEFRNIFDERPTMDTCIGDMISQCTGRMEEICRVCMGASGAFRNIFDERPTMDMCIGDMISQCTGYVVKRGDSLPENICLPCLEDAMSAFNLKSTCEQNHTFFLTLMDKDKDVWLHSDDRTEQSKHQDDSNNSDNCERLFKCSVCPKSFPRKSHLTEHSHSHTGERPYTCPHCAKSFSQSRILRNHIRTHTDERSFYCAHCSKSFKLKGQLIVHSRTHTGERPYKCSYCAVSFKQLAHLTSHVRSHTGERPYKCSHCPKTFTQVPNLNMHIRTHTGERPYKCTECSKSFVQNYHLKEHIRTHTGERPFKCTQCPKSFQKNANLLEHTRTHTGGQPYQCPQCPKTFLARAYLKIHIRTHTRNAELPYKCSHCSDTFAQVGILQAHMRSHTDEHERPYPCPHCSEWFSLEDNLKTHLRTHMGEGPYQCNECSKSFIQKYLFERHIRTHSDDRPYQCSQCSKSYKQKAHLSSHIRVHTGENNDISSVSTGEETQSKPLEVEGPHKCSHCSKSFKIQSHLQIHIRVHTGDRPYKCSDCWMSFKQHSHLRMHIRSHTGERPHQCSQCSKAFSEESNLRRHMHTHTDKRPFQCSECPKSFIRKARLERHKEKDHLNEHIPAHTGEIIDPSGAPTAIPDINSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -