Basic Information

Gene Symbol
snpc-4
Assembly
GCA_035043855.1
Location
JAWNMQ010000231.1:1497336-1499645[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 9.2 9.1e+03 -3.1 0.1 22 45 204 229 204 230 0.67
2 5 1.9e-13 1.9e-10 40.7 0.1 1 41 236 277 236 282 0.92
3 5 1.8e-06 0.0018 18.3 0.0 2 45 292 339 291 340 0.91
4 5 6.5e-09 6.4e-06 26.2 0.0 2 46 347 392 346 392 0.93
5 5 4.2e-09 4.1e-06 26.8 0.0 3 41 400 439 398 439 0.95

Sequence Information

Coding Sequence
ATGTGCGATGTGAATAGTCTGAAGCagaaataccaacaacaattgcaagaAATAACAACACTGCTGTCCACCACAGCTGAAAGCGATGCAGATCCCTTGAAACTGAATCAGGACATGCAGAAGCGTCTCGAACAGATGCGTGTACGTATTCTGGATCTGCTGCGGATAGTCCGAGCTCGTTATAAATTTAACGAGGACTTACTTATAAACCGCATGAAGAAGCCGTCTAGGAACGAAGGAGCAGCAGGCACCAAGGAAGTCGTCGGAATGAGTGGAGCTTTGCTGCGCGGTGGAACGTTTCGATTTAAGggtaatttatattttcgcgATGTGAATGGACGAAGTTGTCCCAACAATGAGGACTACGAGCGGCGCTGCAGCAATGAAATGTTCCCCACCGATTTTGATATGCGCTCCAAGCACGTCTGGACGGTGATGGACAGGAAAAACATCGTGATGGGTATTAAGAAGCAGCTGTTGGATCATGCCGAGTACACAGCGACAGCAGTCAAAACCGTTGACAGGAAGGGGAGCAAGCGTAAGGCCATCGATCTTCACGAGCAATCGCTGGCTAATTTGCTGAAACTGACCGACAGCAGCTTCAGCATTGACTGGAATCAGATTAGCACACTCGATCTGCAGCATCGTCATTCATCGTACAGCTGTGAGGCCATGTGGTTAGTGTATTTGCAGCCGCAACTTAAACGCGACGAGTGGACTGCCGAGGAGGATCAAATTTTGCTAGCGGCCGCCAAGGAacacaatatgcaaaattgGGAAGCCATTGCGGCTAAGATGGATCGGCGAACCGACTATCAGTGCTTTGTGCGCATGCAGACAGCTCTGCGCAGTCAATCGGAGCCAACGAGCTCCATGAAATGGACTCAAAATGATAACGAACGCTTGCGAGCAATTGTTTTAAAGAATACGGTTAACAGCGTTGTTAACTGGTCTAAAGTGGCCGAACACTTCCCGAACAAATCGCGATCCACAATAATTGGTCGGTATTTGTATGTCCTGCATCCCAGCATCAGTCACGAACCCTTCACCCAAACAGAGGATATGATGCTGTTTGCTGCCGTTGAGGAATACGATGGCAAGTTTAATTGCATTCCGCGTACGCTCTTCCCCAATCGCTCGACGGCCCAGCTGCGTACGCGCTATAATAATGTGCTGGCGCAGCGACATAAGACTGATTCCTGGTCGGTGAATGATGATATGAAACTGATTGCTTTCGTTGAAAAACATGGCAACTCGCAGTGGGTGAATTGTGCCAATTATTTGGGCAATCACTCGCGCACCAGCTGTCGCACACGCTCTATAGTCATTCAGCGTTTTATGGGGCAGCATCCAAATGCAACGGTGGAGGATATTCCACGTCGCAAGGTGCTGAAAGGTGCTTCAATTACCGCCGACAATTGGGATCAACGTCTCCGTCAGTTGCTAGCCGATCCGAAGTCACTGCACAATAGCCCATCGGACCGGAAGCCACAAACCAAGTCATTACGTCGCAAGGTCTCCGCCACCTATAAGTACTTCATGTATGCCTATAATCTCAATCTACGATCGCCTGCGGCGGCAATACCCCTGGACGAACGTAACCTGCCCACCATGGCTAATGCGCTGCGCTTCCAGCCACCCgcaaatataatcaatataatCCAAAGTGCTTGTCTGCCCAGTCAGCTGTGCTGCTTCTTTAACAAAGTGCTGTGGGAATTGCCTGCGCGCGAAGGAAGTGAATCATCTacggagttgctgctgccgaatTGGTCAACAATGATGGGCTTTCGGgccatatgcatattttcagCGCAATGTAGGAATGATGCCGATTCTGCGACTGAATTGAAACCAACAATCAGCTACTATGCATCTCAGCCAGCGGTTCAGCTGTTGGAGCTACGCATACGGAATCTTTTCTTTCGCACTGTCCAGGTGAGCCGACTGAAGACAACGTCGTTCGAGGCGCTGCCGGCTGAATTGATAAAACTGTCACGTCCAACTATAAATGTCGACTTGTCAGAGACCCTACCGCAAAGGTCACTAATGCAGAAACGGTCGACTAGGCAGCAGACACGGCCAGACATAGACTATGTCAATGCCAACGAAATAGCggaaaagcaaattaaaagtttggGTCAGATGAAACCTGAACCAATCAAACTTGAGTAA
Protein Sequence
MCDVNSLKQKYQQQLQEITTLLSTTAESDADPLKLNQDMQKRLEQMRVRILDLLRIVRARYKFNEDLLINRMKKPSRNEGAAGTKEVVGMSGALLRGGTFRFKGNLYFRDVNGRSCPNNEDYERRCSNEMFPTDFDMRSKHVWTVMDRKNIVMGIKKQLLDHAEYTATAVKTVDRKGSKRKAIDLHEQSLANLLKLTDSSFSIDWNQISTLDLQHRHSSYSCEAMWLVYLQPQLKRDEWTAEEDQILLAAAKEHNMQNWEAIAAKMDRRTDYQCFVRMQTALRSQSEPTSSMKWTQNDNERLRAIVLKNTVNSVVNWSKVAEHFPNKSRSTIIGRYLYVLHPSISHEPFTQTEDMMLFAAVEEYDGKFNCIPRTLFPNRSTAQLRTRYNNVLAQRHKTDSWSVNDDMKLIAFVEKHGNSQWVNCANYLGNHSRTSCRTRSIVIQRFMGQHPNATVEDIPRRKVLKGASITADNWDQRLRQLLADPKSLHNSPSDRKPQTKSLRRKVSATYKYFMYAYNLNLRSPAAAIPLDERNLPTMANALRFQPPANIINIIQSACLPSQLCCFFNKVLWELPAREGSESSTELLLPNWSTMMGFRAICIFSAQCRNDADSATELKPTISYYASQPAVQLLELRIRNLFFRTVQVSRLKTTSFEALPAELIKLSRPTINVDLSETLPQRSLMQKRSTRQQTRPDIDYVNANEIAEKQIKSLGQMKPEPIKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00527975;
90% Identity
iTF_00482159;
80% Identity
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