Basic Information

Gene Symbol
JARID2
Assembly
GCA_035043855.1
Location
JAWNMQ010000124.1:4803235-4811858[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.8e-22 1.4e-18 67.0 0.0 6 89 2050 2131 2045 2131 0.92

Sequence Information

Coding Sequence
ATGGTTGTCTCAAAAGACAACAAGCGTCGCCGTAAGGAAACAGATACGCCGCCAACGTCATCGTCCGCGGcgtcggcggcggcagcagcagcaacactggcTGTGGAGTCATCACCCGAGATGCCTAAAAGAACGAAGGTGCAGGCACAGCGTAAATTTGCCCAAGGCCAGAGTGCGCCCAATTCAGCCGGCGGTGGTGCATTTAACGTTGCCAGCGttgtagcagcagcggcggcagcagctgtagGAACTGCATCGGGCTCCTCATCGTCTGCTGGACCAAGCACATCGACAGCTGACAGCCTGCAGCACCAACAGCCACCTATTGAGATATTGCCGAATCAGCGCCCAATGCCGCAGGATTTTCTAACGTTTCTCTGCTTTCGCAGTTTTCAGGGCAAGCCCAAGGCCAATGATGCAGTTGCCCTTCCGCCCAGCAGAGATGctgtgaacaacaacaacaccaccaccaacaacaagaagaacaacagcagcagcagcaaaaagaaacgTGGCCGACCAGCCAAAAAACCAGGTACAGAGCAGATGCCAACAACGACTAAAACAGCTAGTGATAAAATtgaagcagcagcgacgcccaCTCCTCCTCCGCCCTCTCAATCTCAGCCCCAgcctctgctgctggctggAGCAGTGCGTAAGCGTGCCGAGGTTGTTGCCGAGGGCAATCGACGAGGCGGACGACGTCAGGAGACTTTAAAGCGGCGCTCAAATCGCGCCGGAAACAAGGAAAAAGATGATGAACcggatcagcagcagcagcagccggcgcagcagcagcaacagccggcgcagcagcagcaaagtaaCGCTGACGCAGTCCATGTcgaggaggaggcggaggaTGATGAGGAGGATGAATTCTTTTCGGCGCATGATGCCAGCTCGCGTAATGGTAtcgccgccgccgtcgccgaTGAGACGCTCTCCAAGTCGGAGATAATGCAATCAAATACAAGACGTGGTCGTGGCAGAAAATCTGTtgtggcagcgacagcagacTCACCTATTGCAGTCAACGAGAGCAGGGCCAGcaaagagaaggagaaggCGCCCGTGAAGCGTTTGCGTCAACAGCGTGAATCACCCATTTTTATCCCCTCCCCTGAATCATCGGGACGCATGACGCGACAGCGTGCTTTTTTTGAGCCAGTCAAGGTGCCGCCAAAGCAAGAGCCGTCAGAAGTGGAGGAGAAGcacgaggaggagcaggagctgaaagaacaaaaaaagaataaggAAAAGGAGCAGCttaagcaggagcagctgcagctgcagaagcagtcaacggcatcagcagcagcagtcgagcccaagcagcagcagcacatcaaGGAGAAAATCAACTCAAGCATTTATGCCAAAGATGCGGCCAAGCTAGAGAATGGTGTCACCACAGCGacagctgctgcggcagcggaGCAACAAAAGGGTCTCAATGTCTTCGATTTCAGCTCCGATGATGAGCAGCCGCTGGCCAAGGCCATCAAGCTAAAAAAGGGCGGCAAAAAGGCGGCAGTGGGAGCGGGAGGAGGAGcgggagcaactgcagcagcagctggaacgGCAAATGCACGCGGTCGCAAATCAGCCGCCGGCGGATCGgcaaaaaagcagcagcggctggaGGAAAAGGAAAAGGCAGCTACTCCGCCTGAAGAGCCGTCAAAAACAAAGCGTGGCAAGCCATTAAAAAAGAAAGCCGCCGAGCCGGAAAACGACGAGCAGGGGGTGGATGCCGAGGAGTCCGATTTATGCCCACCCTCGcccaaaaagccaacaaacaacaataatgcacGTCCCGTGCGTCGTCTGGCGGCACAGCTGAAATTACAGCAACGCTCGCGAAGTCCAagtccgcagcagcagcgcagtcaGCGTCCGTCGCGTAAGACGAAAGAAGCTGCTGCCATCTACATGGGCATCATTGGGCATAAGTTGCAGCTGGCCGATGACGAGGACGATGATCTGTCGCTGAGCAGCTTTCCCGATATACCCAATGTGAAGCAGATGGAGAAAATGGAGAAGGAGATTAAGAAGAATGCGGCAGGCAAACATACAAGCAAaccaggagcaacagcagtagcagcaacgaCGGCAAGAGCAggaacaacagaagcagcagaagtagcagGAGCAGTAGTatcagctgatgctgctgctgcaattgaacCGACAACTgaaacgccagcagcagcgccgccgCCACCTCCACCTGCTCCACGACGCGGTCGACCGCCCAAGCAGGCAAAAGccgcagctgcagccacagTCAAGCCTCAAATAGAGGGCATGCTGGTGAAAAAAGGCGCACTGGCGCTGGCTAAAGCAAAGtccgaacagcaacaaaaaaaccaacaagaacaacaacagcagcagcagcaacaacaaaaagtcgaCTCCGATGCCGAGGAGGATTTTTTAATCAACGAGGAGCTAAACGAAACGAAGCGCAAGCTCGAAAAGAGTTTCAGTGACTCGGATGATGAGCCGCTGGCAATTAAagtgccaacagcaacagcagctgcagcagcagcagcagcaacagttgcagcagcaacaacagcagcagcagcaacaaccacaacaacaacagttgcagcagcaacaacaaacacagctaaagccagcaacagcagcagcaaaacggaaacagcagcaacaactgtgactcaaacaacgacagcaacaactgcagcagctgcagcaacagttgcagccaAAACTACACCaactgcggcagcagcaacgactacagcaacagcagcaacaactacagcaacaactacagcagcagcaaccactacagcaacagcaccaacaactacagcagcagcaacaacaacaacaacaactgcaccagcatcagcagttACTTTAAAGCCACCACAACTGGGCGTTGCAACAGCCACGCCCATAACGCCATTAACCATGTTGCCGCTGACGACAAAGCCCAGTCCATTTACAATATCACCACCGAGCTATGCATCCGCAGCAGCCACACTAAAAGCAATGGAAAAGAAATCACCCGTGCCCACCTCGAAGATATTGAATGTGCCTGCCACATATGCGTTGCCCGGCAGCGGAACAATTGGCATGGGCGTGGGTGCCGTTGGCTTTGGGAAGAGCACATCGTATTTGCCGCAGGCATCGCCACACTATCAATCCCCGTATGTGCGTCCGCCTACGTTTTGTGCCGCTGCAGGTGCGGCTGTTGCTATTGGCAATAAGACTCCGCAtcctcaacagcaacagttacTGGCAGCGACAGCGGGGGCAACAAGCACAGCCCAGCAGACGTCGACACCACTCAAATATCAAACGGCGCCCACTATTTATCCGCCACCCATTGAGGCGTATCAGTGTCCCAAAATCAATCCCAACTTTCTAACGCCCAAATATGATCGAGCGAGCATTTTGCCGCGtgtcaataacaataataatgcgGTGACAATTAGCAATACGAGCGCCAGCAATTTTACGGCGCCAACCATTGCAAGGCCAACGCTGAGCACACTGACCACGCCGACCACACATGCTCCTGTTACATCTACGGCctctgcaactgttgcatcAAAAGCAACGACTGCCGTTAGTCAAAGTCTTAGTTTGACCATAACTGCAACGCCGCCAGCTGTGGCatccacatcagcagcagcggcagcacaacagcaacaacaatcacagcagcaacaacagcagcagtcgcaacaacagcaatcacagcagcagctacagcaacaacaacagcagcaacagtcacatccacaacaacaatcgccaGCGTTGACAATGACGCCAACGACAAGCACCAATAACAATTCGGATCCGTTGAAAGATGAGATTGGTAGCATTTTGGCGCAGGCAACACTCATGCCCAGCAAGGAGGAGTCGGGAAAGATCTTTGGCATTGCCAGCGTGAGTCTGGCACAAAGTTCCGGGCCGGATAATACCAAATGTACGCTCGGAAAATGTGGATCGATACACAAACCGGTGCTGGGACCTGTTGTGCCCACAGAGGCCTACTTTGGTGATCAGTTGTCGGGCAAGGAGCGTCGCAAGGCCAAGGTGAATATGACACACGAACAgatccaaaagtggctcatcGAGTGCAGCTCGAATCCCGATGAGATACAGGATGATCTCGATGATGAGTACGACGACAGTTTGAGGCCGCAACAGTCACAAACGCCGCCGGGTCCGGCGCGTGACGACAAGGAGAGCACAAGCTTCAGCAGCTCCTCGAAGAATACGCGTGGCGAGCTCGGCAAAAGTGAGAGTGCCTGGTCCGCCAAGGGGCCATCGCTGAAAGCGACACCGGTCCTCGTCAgcgcagcggcggcggcaacagcagcagctgcagcagcagcagccaatctGCGTGATATGGACACAGAATCGGATACCATGGACTTTGATAAGTGTGTGACGCCCGTGAATCTCACCCAGAAAAAGGAGATCtcgtctgcagcagcagtcgccaacagcagcagtgatAAAAGGAAGCCGAAGAATGCCGTcaaagcaacagctgctgctgcagctggcagcaacaataagcgAGGTggtggagctgcagctgctgccaacaaACGTCTTGCGGCTGCCACAAAGCTGTCGACGCCAACgcccaccaacagcagcagcaatacgcCCACTTcggcaatggcaacgacaacgacactgacaacaacatcaatgtCAGCCAAACGAACGCCCATCTATCAGAGCAGTCCAAGCAAAGCCAAactggacaacaacaacaagaagcagcagcagcaaaagttgcCAATTAAAACTTCAGTTTATGCCTTTGGCAAGGAAGaggagacaacaacaacaacggcaaatgtaaagaaaacagcagcaacagcaagtgttgctgctgcagctgccgccggCAAGGCGACAAATCGTCGCCGCAATCTTGAAGtcgaaacaacagcaaccaaaactGCAACGCCGCCGCCAGCGTTAAGCGAACGTTCTCCAACTAAAAAGCGTGCGGCTgccacagcggcagcaacagccgtGCAACTAACGCTCAGCCCAACGGATAAGCTGGAGAAGCccaaggcagcagcagcagcagcgcgcaagaaacaacagcaacagcagctaaagcagcagcagcaaaagcaacagcagcaaaagcaacagcagcaaaagcaacagcaacagcagcaaaagcaacagcagcaaaaggagcAACTGCAAAAAGAGCAGCATAAagaggagcaacaacagcaaaaggagcaacagaaggagcaacaacaacagcagaaggagcagcaaaaggaacaacaacaggagcagctgcagaaaaagacagcaactgcagcaggagcaactgCAACCAGTGCTGGTGGAGATTCGGATGCAGAGGGTGCCACCTTTTACATACCCTTACTGCAAGGCGCCAGCAGTGGCGACGGTGGCATTCAAGGCGTTGCCGTCAAACTGGGACGCGAGGGACCCGATGGGCCCAATCAAAAGGTGGTGATGCAAGCGACGCTCGTGACCAAGGCGCAAATGGATACGAACTCAGCGAAGCCGCTGCCCGACAATGAGCAGCTGGTGAAAACGCTACTCAATGCGGCCAACACAAACACCAATGAGCCAACGACGCCcagcaataatagcaacagctTAAAAGCCAGtacctcagcagcagctgcagcagctgtggcaacagcaacgggagcagcaacaacaactgcctcCGGCAATCTAGTCCGCGTCAATTCCAATTCATCACTCTTCTCTGGCTCTGCCAAATCCCGTAcggctgcaacagctgctgcgaTGGCCGCCTCGAATGCGCTGgccaaaaaatacaaagatgATACTCCCATTAAGATGGCCAACAATACGGCATTCCCCAGACACGATGATCCCACACAAATGGTCGAGGCGCCCATTTTTAAGCCCACCGAAAAGGAGTTTGCCGATCCCATTGAGTTTATTGAGCGCATCACACCAATCGCCGCGAGATTTGGCATCTGTAAAATAATACCGCCCGCCAGCTTTAAGCCGGAGTGTCGGATTTCGGATGAGATGCGTTTCACGGCGTACAATCAGTATGTGCACAAGATGCTGCATCGCTGGGGCCCCAGCGCCAAGGAGTTGAGTGCCATCAAAAAGTATTTGGCCACGCAGAGCATTGTGATGAATCATGCCCCCTGGATCGGTGGCATGGAGGTGGACTTGCCGCGTCTCTATCACACCGTGCAGGAGCTCGGCGGCCTCAAGGAGGTCATCGAGAAGAAGAAATGGGCACGTGTCGCCGAAGAGATGTGCATACCAAAGCTCGCTCAGGACCGGGTCACCAAACTGGATGACATCTACTGCAAGTACTTGTTGCCCTACGACACCCTCTCCCCTGCGGAACGCCAAAAACTCTTCGACGAGGTCGAAGCGGATTGGGCGAAGCGGGAGGCACGCGCCCGTCGCAATGCGGATCGTTTTGTCAATTCAACGGAAAGTGTGTCCAATGTGGAGGATGATCTATCCacggatgaggatgatgaaTCGGAGGAGGAACTCGACGGTGTTTCCATGGAGTGCATTGTCAAGGGTCGTAGCATGCCGCTCAGTCAATTCTATCGGATTGCCCGCAACACAATGGCGCTGTGGTTCAAGAGCACCGATCCCACCGTTAACGAGGTCGAGGCGGAATTCTGGCGCCATGTCGCCGTTCGCGAtagtcatgtgtgtgtgcattccGGCTCCATTGATAGTTCCGGCTGGGGCTATGGTTTCCCCAGTCCAGGCCCCAAAGGCAAGGGTTCGAATTATGCGCGTCACCCGTGGAACCTGAAGGTGCTCACAAATAATGTGGGCTCGGTGCTGCGCTCGCTGGGACCTGTTATGGGCGTTACAGTGCCTACTCTGCATGTGGGCATGCTCTTCTCCGCCTGTTGTTGGTATCGGGATCCGCACGGTCTATCCTGGATCGAGTATTTGCATACGGGCGCCTCCAAGCTCTGGTACGGCATTCCCGACGATCAGAGTGCCAACTTCCGAGCGGCACTCACGTCTCTGATTCCGACGCACTGCCAGAACAAGACCATTTGGTTGCCCTGTGATACGGTGATGGTGCCGCCGCACATGCTTACCGATCGAGGCGTCTCGCTGTGCCGCATCGAGCAGAAACCGGGCGAGTTTATCGTTGTCTTTCCGCGCGCCTACACCTCCAGTCTGGCCACAGGCTATGTGGTCTCCGAGAGCGTTTACTTTGCCACCAACTCTTGGCTCGATCTGGCCAAGGATGACTTTAGGGACATCCATGAGAGTTGTGAGCCGGCCATGTTCTCGCTGGAACAGCTGCTCTTTGCTTTGGGCTATGATCAGCGCGTCAATTCGGACACATTGCATCAGATGCTGCCCATGCTGAACGATGTCTGCGAGAAGGAATCGGCGGCACGTGAACAGCTTAGAGCCGCGGGCGTCACAGCCAGCGAAAAGGTGCAGGCCGAGAAGGGACAAAAGGGGTcgaagaagcaacagcagccgccgcacaAATCCATCGATAGCGAATGCGATCTGTGCCGTGCCAATCTGTACATATCGATGGTGCGCACCGAGGATGGCAACATCTACTGCTTGCAGCATGCTCTGAAGAATATCAACAGTGGCAACGTGCAACCGAAAATGTGCAAACTTGTATACGCCTACAATGTGGACGATGTGCAGCAGCTGATCCGCCAGTTGCAGGAGAAGATTAATCAGATGCATCACAAGGCGGCCGTTAAGAAAAAGTAG
Protein Sequence
MVVSKDNKRRRKETDTPPTSSSAASAAAAAATLAVESSPEMPKRTKVQAQRKFAQGQSAPNSAGGGAFNVASVVAAAAAAAVGTASGSSSSAGPSTSTADSLQHQQPPIEILPNQRPMPQDFLTFLCFRSFQGKPKANDAVALPPSRDAVNNNNTTTNNKKNNSSSSKKKRGRPAKKPGTEQMPTTTKTASDKIEAAATPTPPPPSQSQPQPLLLAGAVRKRAEVVAEGNRRGGRRQETLKRRSNRAGNKEKDDEPDQQQQQPAQQQQQPAQQQQSNADAVHVEEEAEDDEEDEFFSAHDASSRNGIAAAVADETLSKSEIMQSNTRRGRGRKSVVAATADSPIAVNESRASKEKEKAPVKRLRQQRESPIFIPSPESSGRMTRQRAFFEPVKVPPKQEPSEVEEKHEEEQELKEQKKNKEKEQLKQEQLQLQKQSTASAAAVEPKQQQHIKEKINSSIYAKDAAKLENGVTTATAAAAAEQQKGLNVFDFSSDDEQPLAKAIKLKKGGKKAAVGAGGGAGATAAAAGTANARGRKSAAGGSAKKQQRLEEKEKAATPPEEPSKTKRGKPLKKKAAEPENDEQGVDAEESDLCPPSPKKPTNNNNARPVRRLAAQLKLQQRSRSPSPQQQRSQRPSRKTKEAAAIYMGIIGHKLQLADDEDDDLSLSSFPDIPNVKQMEKMEKEIKKNAAGKHTSKPGATAVAATTARAGTTEAAEVAGAVVSADAAAAIEPTTETPAAAPPPPPPAPRRGRPPKQAKAAAAATVKPQIEGMLVKKGALALAKAKSEQQQKNQQEQQQQQQQQQKVDSDAEEDFLINEELNETKRKLEKSFSDSDDEPLAIKVPTATAAAAAAAATVAAATTAAAATTTTTTVAAATTNTAKASNSSSKTETAATTVTQTTTATTAAAAATVAAKTTPTAAAATTTATAATTTATTTAAATTTATAPTTTAAATTTTTTAPASAVTLKPPQLGVATATPITPLTMLPLTTKPSPFTISPPSYASAAATLKAMEKKSPVPTSKILNVPATYALPGSGTIGMGVGAVGFGKSTSYLPQASPHYQSPYVRPPTFCAAAGAAVAIGNKTPHPQQQQLLAATAGATSTAQQTSTPLKYQTAPTIYPPPIEAYQCPKINPNFLTPKYDRASILPRVNNNNNAVTISNTSASNFTAPTIARPTLSTLTTPTTHAPVTSTASATVASKATTAVSQSLSLTITATPPAVASTSAAAAAQQQQQSQQQQQQQSQQQQSQQQLQQQQQQQQSHPQQQSPALTMTPTTSTNNNSDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEAYFGDQLSGKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDEYDDSLRPQQSQTPPGPARDDKESTSFSSSSKNTRGELGKSESAWSAKGPSLKATPVLVSAAAAATAAAAAAAANLRDMDTESDTMDFDKCVTPVNLTQKKEISSAAAVANSSSDKRKPKNAVKATAAAAAGSNNKRGGGAAAAANKRLAAATKLSTPTPTNSSSNTPTSAMATTTTLTTTSMSAKRTPIYQSSPSKAKLDNNNKKQQQQKLPIKTSVYAFGKEEETTTTTANVKKTAATASVAAAAAAGKATNRRRNLEVETTATKTATPPPALSERSPTKKRAAATAAATAVQLTLSPTDKLEKPKAAAAAARKKQQQQQLKQQQQKQQQQKQQQQKQQQQQQKQQQQKEQLQKEQHKEEQQQQKEQQKEQQQQQKEQQKEQQQEQLQKKTATAAGATATSAGGDSDAEGATFYIPLLQGASSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSAKPLPDNEQLVKTLLNAANTNTNEPTTPSNNSNSLKASTSAAAAAAVATATGAATTTASGNLVRVNSNSSLFSGSAKSRTAATAAAMAASNALAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFKPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHAPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNSTESVSNVEDDLSTDEDDESEEELDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNVGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATNSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSDTLHQMLPMLNDVCEKESAAREQLRAAGVTASEKVQAEKGQKGSKKQQQPPHKSIDSECDLCRANLYISMVRTEDGNIYCLQHALKNINSGNVQPKMCKLVYAYNVDDVQQLIRQLQEKINQMHHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00527829;
90% Identity
-
80% Identity
-