Dpeg009084.1
Basic Information
- Insect
- Drosophila pegasa
- Gene Symbol
- -
- Assembly
- GCA_035046225.1
- Location
- JAWNOD010000375.1:371084-374711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.012 15.9 3.0 1 23 114 137 114 137 0.98 2 11 0.00073 0.045 14.1 0.5 1 23 143 166 143 166 0.97 3 11 1.6e-05 0.001 19.3 2.5 1 23 169 191 169 191 0.98 4 11 3.4e-05 0.0021 18.3 3.6 1 23 197 221 197 221 0.97 5 11 0.00011 0.007 16.6 1.0 1 23 227 249 227 249 0.98 6 11 8.9e-06 0.00055 20.1 2.6 1 23 255 277 255 277 0.98 7 11 0.00087 0.053 13.9 3.9 1 23 283 305 283 305 0.96 8 11 1.6e-05 0.00097 19.3 0.0 1 23 311 333 311 333 0.98 9 11 5.1 3.1e+02 2.0 0.2 3 23 362 383 360 383 0.84 10 11 9.5e-05 0.0059 16.9 3.2 2 23 496 518 495 518 0.95 11 11 0.00048 0.03 14.7 6.4 1 23 551 574 551 574 0.98
Sequence Information
- Coding Sequence
- ATGTTAAGGCAGTGTCTAATCAATGTGGACTCCTCGCAACTGAATGCCAATCAGCCACTGCTCTCAAAATTGGCCGACGAGTACAGCAAAGGATCAGGTGAAGATGACAACGTCGCTGATGTAGCGGCTTTTAAGCCATTAGACGTATGTTCGTTCAATGAGGTCAAACTGGAAAATGTGCAATTGCAAACCAACGAGAATATTCAGGACCAGAACAGCTGGAAAAATGCTGACGAACAGGATGAAGGCTCAGCAGATGCCCAGAGCTCCAGCGGTACGGACGGAGACGACACTGCCGATAGCGAAATAGCAATGCCATCTGTATTTAAGCCCAAGGagtacaaatgcaaatattgcgATGGCAAATACACGACTCTTAAATACCTAAAAATGCATCTTAAGATGAGCCATCCGCATCCGAACGCCTTCAAGTGCAATGAATGTGATGCCACCTTCGACGTGGAACGCGCCTTGCTAGCTCATCGTCACAAGGTCCACACGGAGTTTACGTGCAACCTGTGCGACAAGATATACAAAAGCTCACGCACTCTGTTTCGCCATGAGCAGACACACTCGGGAGTACGGCAATATAAATGTGGGCACGAGAGCTGTGGCAAATCCTTTGTAAGCCAGCACAATTTAACGTCGCATAGTCGCGTCCACAGCACAGAGCGTAACTTTGTCTGTGAATTATGCGGCTATCGCTCGCGCTATCACGATGCACTGATCGTCCATCGACGAACGCATACGGGTGAGAAGCCGTTCAAGTGTCAGACATGCGAACGCTGCTTCGCTTCCAAGTCACTGCTTAACGAGCATCAGGCCATGCACTCCACAGAGCGACCGTACAAGTGCGACAACTGTGAGGCCTCCTTCTCACGGCCCAAAGCTCTGTACCATCACAAGCATCTGCATTTGGGCATCAAGAAGTTTAAGTGCAAAATCTGTGGCAATGCGTATGCCCAGGCAGCGGGGCTTTCAGCCCATATGCGTGGTCACAAAGCGCCGGACACGTTTGCCGGGATCGCTAATGCCAAGTGCGGGGAGGTATATTTGCAGAGTCTAAACAGCTATCGCATTGACTGCGCCTTCTGCGACATAAAGAGCTTTGTCTTCTCAGACTTTCTGCTGCACATCCAGAACGAGCACTTCGAGAATGGTCTGCTCAAGGGAGAGGTGCTGCTGCCGAAACAGGAGCAAATGGACAGCAACACCACAACAACACAAAGGAATCTATTTGCCTGGTATGACGTGACGACCCACGGATATGACTTGGCCGGCAACAGTGGAAACGAGTTTATGGGCGACACTAAACAGTTGctggacgacgacggcgacgacgctGGTGAGGATGATGACTTAGAAGACCCTGTTGGCATTATGAAATGGGATATGTCGACGGAGCACCTTGGATCTGACGTTGATCATTCAGATGCGATGGGTCAGCACCAGGAGGCAACACTGAAGGGCACTAAGGAGCAGCTAGTCTGCCTGCACTGCAATAAGATGTATCAGAGCAAAAAGTCGCTGCAGCGCCACATGGAGCGTCAACACAAGTATGCCAATTCAATATCAGAGGCTGACGTGGATGGGGATGTAGACGTGAACTATGAGCAGCCCAAGGTGCACATGTCCAAGCCATCCACCAAATATAAATGCGAGCATTGTGACAAGAACTATCATGGCAAATACACATTGCGACAGCATTTGAAACGGGACCACGACATCAACCTGAGCGacgcatttttataccctgagcccattgaaaatgggaaatcagggttcgacgagggtcagggtataccctag
- Protein Sequence
- MLRQCLINVDSSQLNANQPLLSKLADEYSKGSGEDDNVADVAAFKPLDVCSFNEVKLENVQLQTNENIQDQNSWKNADEQDEGSADAQSSSGTDGDDTADSEIAMPSVFKPKEYKCKYCDGKYTTLKYLKMHLKMSHPHPNAFKCNECDATFDVERALLAHRHKVHTEFTCNLCDKIYKSSRTLFRHEQTHSGVRQYKCGHESCGKSFVSQHNLTSHSRVHSTERNFVCELCGYRSRYHDALIVHRRTHTGEKPFKCQTCERCFASKSLLNEHQAMHSTERPYKCDNCEASFSRPKALYHHKHLHLGIKKFKCKICGNAYAQAAGLSAHMRGHKAPDTFAGIANAKCGEVYLQSLNSYRIDCAFCDIKSFVFSDFLLHIQNEHFENGLLKGEVLLPKQEQMDSNTTTTQRNLFAWYDVTTHGYDLAGNSGNEFMGDTKQLLDDDGDDAGEDDDLEDPVGIMKWDMSTEHLGSDVDHSDAMGQHQEATLKGTKEQLVCLHCNKMYQSKKSLQRHMERQHKYANSISEADVDGDVDVNYEQPKVHMSKPSTKYKCEHCDKNYHGKYTLRQHLKRDHDINLSDAFLYPEPIENGKSGFDEGQGIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -