Basic Information

Insect: Drosophila pectinifera
Gene Symbol: -
Assembly: GCA_008042775.1
Location: VNKC01004657.1:145795-148049[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.85 60 4.2 2.1 1 20 128 147 128 148 0.92

2 10 0.00018 0.013 15.8 0.5 2 23 196 217 195 217 0.97

3 10 0.0002 0.014 15.6 0.9 1 23 243 264 243 264 0.98

4 10 0.0047 0.33 11.3 2.7 1 23 270 292 270 292 0.98

5 10 7.9e-06 0.00055 20.1 0.5 1 23 318 340 318 340 0.98

6 10 7e-08 4.9e-06 26.5 0.9 1 23 346 368 346 368 0.99

7 10 0.00096 0.068 13.5 5.5 1 23 374 396 374 396 0.98

8 10 4e-06 0.00028 21.0 0.8 1 23 402 424 402 424 0.97

9 10 3e-05 0.0021 18.2 0.3 1 23 428 450 428 450 0.99

10 10 0.0057 0.4 11.1 0.1 3 23 476 497 475 497 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.85	60	4.2	2.1	1	20	128	147	128	148	0.92
2	10	0.00018	0.013	15.8	0.5	2	23	196	217	195	217	0.97
3	10	0.0002	0.014	15.6	0.9	1	23	243	264	243	264	0.98
4	10	0.0047	0.33	11.3	2.7	1	23	270	292	270	292	0.98
5	10	7.9e-06	0.00055	20.1	0.5	1	23	318	340	318	340	0.98
6	10	7e-08	4.9e-06	26.5	0.9	1	23	346	368	346	368	0.99
7	10	0.00096	0.068	13.5	5.5	1	23	374	396	374	396	0.98
8	10	4e-06	0.00028	21.0	0.8	1	23	402	424	402	424	0.97
9	10	3e-05	0.0021	18.2	0.3	1	23	428	450	428	450	0.99
10	10	0.0057	0.4	11.1	0.1	3	23	476	497	475	497	0.98

Sequence Information

Coding Sequence: ATGTCAACGGACAACGAGACCGAGGAGATTAAGTCCCACATGGATGTGGAGGTCGGACTCTCGTCCAGATGTGGAGCGacccaggagctgctgctttACTGTGAGATCTGCACGAACATCTACGAGGACAGTGAGGCTTACGCCAAGGATCACAGTCAGCAGgccggctgctgcagtggtGGTATCAAGGAAGAGTTCGAGTTTGTAGAGGAAATAATTGGGGACGAGCAAACAGAAGTCGCAGCCAGTTGCACGTTGGCCGAGGACGATAATGAAGAGGAGATCCTCGAAGCAGACGTGCCGCTCTGGGAGGTGGTAGAAGACACTTCTGCCACCATTAAGGTGGAACCCATCGAGACTGAAAGCAGCCATTCAGATCGATACTTTTGCTATGACTGTCACAGCATTTTTGAAAACAGGAGTAGCGCGGAGGATCATGTTTGTCCACAGTCAGAATCTGGCGGCGGCTCCATCCAGCACTCAGTTGAAACTGCCTCAGTCGCGGACAAGCCACCGCCACGCCGCAAGTCGCCCAGCGTGGCAGCAAGGCCAGATTCCAAGAGTGGTGCACAACCCAGTGCCATCAGCTGTGAAATATGCAACACCGTTTTTAGCTCTGCCAAATTTCTAAAGTTCCATATGCGCATTCATGAGAAGGTCGTTTCCAAGAGCATACAAGACGCCCTTCCCGTGGGCGCCCACCAGCAGTACAGTGAGCTGGATCAGTTTTACTGCGAAATTTGCAACAAAAGCTTTGACGAAAACCTCCTGACAGTGCATAAGCAAATGCACCAGCAGACCAAAGAGTTTATGTGCGGCACTTGTAACAGACAATTCTACAACTCTATCGACTACCACATGCACCTTAAGATTCATCAGAAGCCGCGAGATTCTGATGCCGCTAGAATATCCGAACATCGATCCACTGGTGGCAATAAGGAGAAGTCGGGCTTTCCCTGCCAGTACTGCGATCGTGTGTTCTCTCGGCCCTATGAGAAGGTCAAGCACGAACGGGTGCACACAGGCGAGAAGCCCTATTCCTGTGAGGTGTGCGGCAAGACCTTTCGCGTCTCCTACTCACTTACTCTCCATTTGCGAACTCATACGAACATTCGGCCATATGTGTGCACCGTGTGCAATAAGCGCTTCAAGTCTCACCAGGTATACTCTCATCATCTGCGGATCCACAGCTCGGAGCGGCAGTTTGCCTGCGACGTATGCTCAAAGTCCTTCCGAACTTCGGTGCAACTTTACGCCCACAAGAACACCCACACCAAGCCGTACCAGTGTGTCCTATGCAACCGCCCCTTCTCGTCGATGTATGCCGTAAGGATTCACATGCAAACACACGAGGTAGAGAAGAGCAAAGGAAATGTAAAAAGCTTACAAGCTACCAAGAGCCAAGCCTCAGCTGGGAAATTCTGGTGCAGCTCCTGTGGAGCAGAGTATGCTCGTATGTTTGCCCTGCGGTTGCACATGAAGACAGCTCACGGCCTTGTGGAGGAAGTGatacaggaggaggagcattCATCCTCAGCGCCAGAAGATGTCCTCGGCAACCCCGCCCAGACTGACTCTGAGACTGCTGTCCTGATAGCAGCCGCCGAGGCTGACGCTGCGTACATCAACGCTGTGGTAAACGATGTCGACGTCGTTGGATCTGTGCCCACATACGAAGAGGTGGCCGTTGAGTTCGATGTTGACAACTTCCACAGCGAGGAGATCATCACGGATTGGCTTAAATAG
Protein Sequence: MSTDNETEEIKSHMDVEVGLSSRCGATQELLLYCEICTNIYEDSEAYAKDHSQQAGCCSGGIKEEFEFVEEIIGDEQTEVAASCTLAEDDNEEEILEADVPLWEVVEDTSATIKVEPIETESSHSDRYFCYDCHSIFENRSSAEDHVCPQSESGGGSIQHSVETASVADKPPPRRKSPSVAARPDSKSGAQPSAISCEICNTVFSSAKFLKFHMRIHEKVVSKSIQDALPVGAHQQYSELDQFYCEICNKSFDENLLTVHKQMHQQTKEFMCGTCNRQFYNSIDYHMHLKIHQKPRDSDAARISEHRSTGGNKEKSGFPCQYCDRVFSRPYEKVKHERVHTGEKPYSCEVCGKTFRVSYSLTLHLRTHTNIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFACDVCSKSFRTSVQLYAHKNTHTKPYQCVLCNRPFSSMYAVRIHMQTHEVEKSKGNVKSLQATKSQASAGKFWCSSCGAEYARMFALRLHMKTAHGLVEEVIQEEEHSSSAPEDVLGNPAQTDSETAVLIAAAEADAAYINAVVNDVDVVGSVPTYEEVAVEFDVDNFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00613632;
90% Identity: -
80% Identity: -