Basic Information

Insect: Drosophila pectinifera
Gene Symbol: -
Assembly: GCA_008042775.1
Location: VNKC01004099.1:10790-16230[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9.5e-08 6.7e-06 26.1 1.8 2 23 153 174 153 174 0.97

2 9 2.4e-07 1.7e-05 24.8 1.6 1 23 180 202 180 202 0.98

3 9 1.1e-07 7.8e-06 25.9 1.1 1 23 208 230 208 230 0.98

4 9 6.7e-07 4.7e-05 23.4 0.7 1 23 236 260 236 261 0.95

5 9 4e-05 0.0028 17.8 3.1 1 23 266 288 266 288 0.97

6 9 0.00037 0.026 14.8 3.3 1 23 294 317 294 317 0.98

7 9 0.00045 0.032 14.5 1.3 1 23 323 345 323 345 0.98

8 9 3.8e-06 0.00027 21.1 0.8 1 23 350 372 350 372 0.98

9 9 0.0039 0.27 11.6 0.3 2 23 379 403 378 403 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9.5e-08	6.7e-06	26.1	1.8	2	23	153	174	153	174	0.97
2	9	2.4e-07	1.7e-05	24.8	1.6	1	23	180	202	180	202	0.98
3	9	1.1e-07	7.8e-06	25.9	1.1	1	23	208	230	208	230	0.98
4	9	6.7e-07	4.7e-05	23.4	0.7	1	23	236	260	236	261	0.95
5	9	4e-05	0.0028	17.8	3.1	1	23	266	288	266	288	0.97
6	9	0.00037	0.026	14.8	3.3	1	23	294	317	294	317	0.98
7	9	0.00045	0.032	14.5	1.3	1	23	323	345	323	345	0.98
8	9	3.8e-06	0.00027	21.1	0.8	1	23	350	372	350	372	0.98
9	9	0.0039	0.27	11.6	0.3	2	23	379	403	378	403	0.95

Sequence Information

Coding Sequence: ATGGACACCATCTGTAGATTATGCTTCCAAACGGCAACGCTCTTCCAGGTGCCCGGCTATAGCATACCCACGTGCGTCCGCTGCTCGGAACAGTTGACAAATAATCCAAACTTCCATCAatcggcagcggcggcggcagcagcgacatCGGCGTCGACGCCAGCAGCGGCCGCTGTTGCTTCTTCggctgccgcagctgctgccgctgcagcagcagccgctgctgcatcATCGACGTCGACGGCCTCCTCTAGCGACAGCGACGCCGTTACCCAGCTGACGAACGGCGGTAATGCTGCcaatgccgccgctgctgccgtgctgcaattgcagcagcagcatcagcaggcgcaacaacaacagcaacagcaacaaatgcaaTCATCGAGTTCTTCCGAGAATCTACAGTCACAGGACGATTCCGAAGATGTGGATCTTATATTCAACGAGGAGGGCTCCTGCCCGCTTTGCAATAAGACTTTCTCGCGCAAATCCTCGCTCATGACGCACATACGGAACCACTCCGCAGAGCGTAAGTTTGTGTGCACCTACTGCCACAAAGGCTTTACGCAGGCGGCCAATCTGCGGAACCACGAGCGCATCCACACGAACGATCGTCCGTACCAGTGCGTGGACTGCGGCAAGACCTTCACCCAGATCACCAACCTGAACAATCATCGGCGCCTGCACACCGGCGAGCGTCCGTTTGTTTGCAATGAGCCGGAGTGTGGTCGCAGCTTTGCCCAGGTGACGAACTTGAACAACCACATGAAGTCGCACCACAAAGTGCAGCAGTATTGCTGCAATGTTTGCAACAAGAAGTTCACGCAGGTGACCTCCCTTAATCAGCATTTGCAGGCGCATGCCGGCGTCACCGGCTACTACTGTCCACGCTGTCCGGAGAAGAACTTTAAGCTGCAATCACAGCTACACACGCACATGAAAACGCATGGCCTGGCCTTTCCGTACGAGTGCGGCAAGTGCGACGAGAAGTTCCTGCAGCAGGCGCACTTGGACCAGCACCTCAAGATGCACGACGAATTCAAATTCAAGTGCGACATCTGCCCGAGCAGCTTTAATCAGGAGTCGCTGCTAAAGAAGCATGTGCAGCGCCATGTCGAGGGCCGTTACCTCTCCTGTCCGGTGGCCAATTGTGCCGAATCCTTTGCAGTGCGCCAGCATCTGTCCAAGCACCTGCTCACCAGCCACTCGCATCATGaactgccgccgccgaagcGCTCCAAGAAGACCGGACAGCTGCAAtcggtgcagcagcagccgctggcGATGATTGGTCAACCACTATCGCTGCAGCATACGACGGGGCAGCGTGGACGGCCGCcgaagaacaagaacaaggcGACACTGGCCGCCACGGCCATCAAGATTGAGATCAATGAGCCGCTCCACAGCCAGCATATCAGCAGTGCCAGCGGCCTGTCCATCCAGCAGCAGATTAACCAgcacatgcagcagcagcagcagcaacaacagcagcagcagcagcaacagcaggcgcaacagcagcagcaacagcatctgCACCTACCGATGGGTCAGGCGGTCAAGGCGCGCTTTATACCCACTAAGTAG
Protein Sequence: MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNPNFHQSAAAAAAATSASTPAAAAVASSAAAAAAAAAAAAAASSTSTASSSDSDAVTQLTNGGNAANAAAAAVLQLQQQHQQAQQQQQQQQMQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECGKCDEKFLQQAHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLSCPVANCAESFAVRQHLSKHLLTSHSHHELPPPKRSKKTGQLQSVQQQPLAMIGQPLSLQHTTGQRGRPPKNKNKATLAATAIKIEINEPLHSQHISSASGLSIQQQINQHMQQQQQQQQQQQQQQQAQQQQQQHLHLPMGQAVKARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533229;
90% Identity: iTF_00609305;
80% Identity: -