Basic Information

Insect: Drosophila paulistorum
Gene Symbol: -
Assembly: GCA_018152135.1
Location: JAECXG010000805.1:3466090-3467957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.16 12 6.7 2.0 1 23 258 281 258 281 0.95

2 8 0.0023 0.18 12.4 1.6 2 23 292 313 291 313 0.97

3 8 7.4e-06 0.00057 20.3 0.1 2 23 323 345 323 345 0.92

4 8 1.6e-05 0.0012 19.2 0.1 1 23 351 373 351 373 0.98

5 8 0.00023 0.018 15.6 2.6 1 23 379 401 379 401 0.95

6 8 0.00057 0.044 14.3 0.5 1 23 405 427 405 427 0.97

7 8 8.1e-05 0.0063 17.0 2.4 2 23 434 455 433 455 0.95

8 8 0.024 1.9 9.2 3.5 1 23 461 484 461 484 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.16	12	6.7	2.0	1	23	258	281	258	281	0.95
2	8	0.0023	0.18	12.4	1.6	2	23	292	313	291	313	0.97
3	8	7.4e-06	0.00057	20.3	0.1	2	23	323	345	323	345	0.92
4	8	1.6e-05	0.0012	19.2	0.1	1	23	351	373	351	373	0.98
5	8	0.00023	0.018	15.6	2.6	1	23	379	401	379	401	0.95
6	8	0.00057	0.044	14.3	0.5	1	23	405	427	405	427	0.97
7	8	8.1e-05	0.0063	17.0	2.4	2	23	434	455	433	455	0.95
8	8	0.024	1.9	9.2	3.5	1	23	461	484	461	484	0.98

Sequence Information

Coding Sequence: ATGGACCTGAAGGCCTTGCCCAAAGGAAAGATCAAAATGAAGAGCAATTGGCATCATTGGTGTCGGCTATGTGGTTGCGATTACCCGGACAATTTGGATGTATTTAGCATACAGACAAGGAACCTAGTTATGGCAATTGGCAAATACTTTTGGGTAGATATTAAAATAAACGATGAACTGAGTCAGTATTTGTGCCGAGAGTGCCATAATCTGTTGGAATATCTAATGAACTTCTCGGAACAAGTTCATCGGGTGCAGCGAATGTATGAACACCTCCAGACTGACAACAATTTGGAAAGTGATGATATACGGAAACAGTATGGGAATTGGGTCCACATGAGATCCTTTCCGAAGAGTTCAAACAATGCAGAGGCAGCAACAAAAGACTTGGATACTGCAATAGTGGACAGTTTTTTAATAATTGAAGAACAGGAGGTACTCGAAGAGGAACAGAATAAGCATCAGGAGGAAGAGAAGCATCAAGAGCATAATCAAGACGAATTAGAGTTACTACAAGAGCATGACGAAGAAGCGGAAGATCAGGAGCATTACGAAGAAGAAAGCCAAGCAGATGAAGAAGAAGCGGAAGATCAGGAGCAAGAAGATGAAAGTGTTGACCATAATATTACCACCGAAGTAATATCTGAATTCGATCATGATGCATTTGATGATGAAACATCTGTTGAAGATGATTCAGTAAAACTTGAACCGGACATTAGTTTTCGCACACTAGAACAGAGGGAGGAGGCGGATGCTAAAGACATTTCAGAATTCAAATGTATACTTTGTTTCAAGGTCTATAGGAAAGCTACTCCATATAAACGTCACCTCTTCACATTGCACGGCATCTGTCCCAAGGATTTGGACAATTGTCAGTGCCAACAGTGTGATATTACATTTTTAACGGTCAATCAACTTATTGCCCATTATCGCACCCATATGACTACTAAAGAGAAGAAGGATAATACCTGCCCATTGTGTTCTAAAGTATTTACTACAGCTGGTGCTCTTAATCGGCATATTGCCGGCACCCATAACAAGCTAACTCCCTACACATGTGATATTTGTGGCAAAGCGGTCAAGACTCTGGCCAGTCTCAAGGACCATAAGCTGGTGCACACGGATGCTTGCCCATTTGAATGTGATGTTTGCCATCGACGGTTTAAGAACAAAGCTAGATTACGAGTGCATTCAGACTCTCATACCGAGGGCTATGATTGTGATATTTGTGGGATGATATTGAAAACCCGTCGAACCCTTTACACACACCGCCAAGTGCATTCGGATGAGAGAAAATGCAAATGTGAGGTCTGCGGTGCAACTTTTAAACGTACAAAAACGCTCAAGTCTCATCTTATCCTGCATACGGGTATACGACCGTATAAATGCAATTTCTGCGGCGCGGAATTTGCCAATGGTTCGAATTGCCGAATGCATAAGCGTAAAAAGCATCCCAAGGAGTTGGCCGAAGAGGAATCAAGGCGTGTGATTCGCTCCACTCGTTTGCCTTTCATAGATGATCTGACTGAAGCCTCCAAACGTATTAAAACACCAGCCAGAAAGGCAGCAGTTCGAACGAATACATCGAAACCGAAGAAAAGTATTAATCCATCAGTAATTGCTATGGAAGAAGAAAATGAGTACCTGCTCGACAATTTGGTTGGTGAAATGTAG
Protein Sequence: MDLKALPKGKIKMKSNWHHWCRLCGCDYPDNLDVFSIQTRNLVMAIGKYFWVDIKINDELSQYLCRECHNLLEYLMNFSEQVHRVQRMYEHLQTDNNLESDDIRKQYGNWVHMRSFPKSSNNAEAATKDLDTAIVDSFLIIEEQEVLEEEQNKHQEEEKHQEHNQDELELLQEHDEEAEDQEHYEEESQADEEEAEDQEQEDESVDHNITTEVISEFDHDAFDDETSVEDDSVKLEPDISFRTLEQREEADAKDISEFKCILCFKVYRKATPYKRHLFTLHGICPKDLDNCQCQQCDITFLTVNQLIAHYRTHMTTKEKKDNTCPLCSKVFTTAGALNRHIAGTHNKLTPYTCDICGKAVKTLASLKDHKLVHTDACPFECDVCHRRFKNKARLRVHSDSHTEGYDCDICGMILKTRRTLYTHRQVHSDERKCKCEVCGATFKRTKTLKSHLILHTGIRPYKCNFCGAEFANGSNCRMHKRKKHPKELAEEESRRVIRSTRLPFIDDLTEASKRIKTPARKAAVRTNTSKPKKSINPSVIAMEEENEYLLDNLVGEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00612339;
90% Identity: iTF_00618662;
80% Identity: -