Basic Information

Insect: Drosophila paulistorum
Gene Symbol: -
Assembly: GCA_018152135.1
Location: JAECXG010000821.1:21678297-21679317[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5e-06 0.00012 22.4 0.8 1 23 103 125 103 125 0.97

2 7 0.00017 0.014 16.0 0.9 1 23 131 153 131 153 0.95

3 7 2.7e-06 0.00021 21.7 2.0 1 23 159 181 159 181 0.98

4 7 0.7 54 4.6 5.1 1 23 187 212 187 212 0.97

5 7 8.4e-06 0.00065 20.1 1.5 1 23 238 260 238 260 0.99

6 7 5.1e-06 0.00039 20.8 2.1 1 23 266 290 266 290 0.98

7 7 0.00024 0.019 15.5 1.3 3 23 298 318 296 318 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5e-06	0.00012	22.4	0.8	1	23	103	125	103	125	0.97
2	7	0.00017	0.014	16.0	0.9	1	23	131	153	131	153	0.95
3	7	2.7e-06	0.00021	21.7	2.0	1	23	159	181	159	181	0.98
4	7	0.7	54	4.6	5.1	1	23	187	212	187	212	0.97
5	7	8.4e-06	0.00065	20.1	1.5	1	23	238	260	238	260	0.99
6	7	5.1e-06	0.00039	20.8	2.1	1	23	266	290	266	290	0.98
7	7	0.00024	0.019	15.5	1.3	3	23	298	318	296	318	0.98

Sequence Information

Coding Sequence: ATGCGACGTAGGATATCCGTAGTAGATATCGAACAGGAATTAAAGTCCAGTTCTCTGCAACCTGGCGAAGACGATGAGCACTATGCAGTTTCTCTAGAGGATGTGCGTCTCTTTGCTCAATTGGATGACTTAAATGGAGACTGTGATGATTTGGAATTGTTAGCACCTTGCGATAATTTCGATTTAATCGATCTAGTCAATGGGGCTTTGCAGCAAACGCCAACAAACATTGAACCAACACTGAAATCAACGAAAATCAAGGTGAAAAGCAAACGTACGCCATCCTCAATGACAAAAGCACAAACTCACATCTGTACCATTTGTGGGCGTGGCTTTAGTGAGGCCTACAACTTGCGCATTCATAAAATGACCCATACAAATGAAAAGCCACATATATGCGATGCTTGTGGCAAGGGTTTTCGTCAATTGAACAAATTGCGTATACATTATGTTACGCATACGACCGATCGTCCACATAAATGTGATATCTGTGACAAGGGCTTTCGCTATGCAAATTATTTGACAGTACATCGACGACTTCATACGGGAGAGAAACCCTACAGATGTCAAATTGAAAATTGCCAAATGTTCTTTCATTCCATACACAAGCGACGAGTTCACATGAAAACGGAGCATTCATCTCAACAGACAATGGAACGCGACCAGGATCAGAAAACAATCATTCCGCCCTCGATTGACTCACATTTAAGCTATACCTGCCCCATATGCCAACGAGTCTTGTCGGATCAATGCTATCTGAATGTTCATTTAAAGCGTCATTACAATCAACGCGACTTCCAGTGTCCACAGCCGGAATGTAGCAAACGTTTCTTCAGCTCGTCCGAATTGAAGCATCATCAGATTTCTCATACACAAGTTCGACCCTTTGGCTGTACGGAGTGCGAGGCGAGATTTCTGCGAAAATCCAACTTCAAACAACATATGAAAATACATGAGCGGCGGCATTAA
Protein Sequence: MRRRISVVDIEQELKSSSLQPGEDDEHYAVSLEDVRLFAQLDDLNGDCDDLELLAPCDNFDLIDLVNGALQQTPTNIEPTLKSTKIKVKSKRTPSSMTKAQTHICTICGRGFSEAYNLRIHKMTHTNEKPHICDACGKGFRQLNKLRIHYVTHTTDRPHKCDICDKGFRYANYLTVHRRLHTGEKPYRCQIENCQMFFHSIHKRRVHMKTEHSSQQTMERDQDQKTIIPPSIDSHLSYTCPICQRVLSDQCYLNVHLKRHYNQRDFQCPQPECSKRFFSSSELKHHQISHTQVRPFGCTECEARFLRKSNFKQHMKIHERRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00503501;
90% Identity: iTF_00503501;
80% Identity: -