Basic Information

Insect: Drosophila paulistorum
Gene Symbol: -
Assembly: GCA_018152135.1
Location: JAECXG010000822.1:44673614-44674872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 8.7e-06 0.00067 20.1 1.8 1 23 211 234 211 234 0.95

2 6 4.7e-05 0.0036 17.8 5.9 1 23 241 264 241 264 0.97

3 6 2.8e-05 0.0022 18.4 4.0 1 23 270 292 270 292 0.98

4 6 2.9e-06 0.00023 21.5 0.6 1 23 301 323 301 323 0.98

5 6 7.3e-06 0.00057 20.3 2.0 1 23 331 353 331 353 0.98

6 6 2.6e-05 0.002 18.6 1.9 1 23 359 382 359 382 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	8.7e-06	0.00067	20.1	1.8	1	23	211	234	211	234	0.95
2	6	4.7e-05	0.0036	17.8	5.9	1	23	241	264	241	264	0.97
3	6	2.8e-05	0.0022	18.4	4.0	1	23	270	292	270	292	0.98
4	6	2.9e-06	0.00023	21.5	0.6	1	23	301	323	301	323	0.98
5	6	7.3e-06	0.00057	20.3	2.0	1	23	331	353	331	353	0.98
6	6	2.6e-05	0.002	18.6	1.9	1	23	359	382	359	382	0.97

Sequence Information

Coding Sequence: ATGTTCTCGCTGCTGAATCATCCATTGGTCTGCCGGTGTTGTCTATTGAAACAACCGCCGCTCTATCACAATATACATGATGCCCATCTCAGTACGGAACTCAAGATCCTGGCCCCTGAACTCCACGTCGAACCCAATGATGGCCTGACGGATGTGATTTGTGATTTCTGTCTGCACCGCCTGCAAGATGCTCTGGATTTTCGCCGTAAATGCCTGGAATCCGAACAGGTCCTGCTATCCAGATACGAGCAATGGCAACGCACTGTAGCTGCCGGCGAGGCCCTGGCTCTGGATGATGTCCTCGAATGCCTAGAGAGAGAAGTGGGCAGTTTGGAGGAGCAGAGAAGCAAACCAGTGGTTAAACCTGTGGCCCATGTGGCTCCCCTAATGGAATATGTGGATTTTAGTAGTTTGGGTTTTCAAGAGCCTTCCATACAGTGCCACAGCAGCAACAACATTCCATTAGCGGCAAGTCTAAGCACATGGGAAGCAGGAACACTAAATACCCCACATCATCTGGCAGCCACTTTGGAAGAGGAACCCACGTTCATGGCCAGTGAGTCATCTGCGCCAGCTCCTCCCCCAACGAAGGCAAAGACGACGCACTCCTCGACCACACCACGTTCCCTTCACCCATGCCTGGAGTGTGAGAAGAAATTCACACGAAACTTTCAACTCAAACTCCATATGATCTCAGTGCATGGTTTGGGTGAGTTGAGATATCAGTGCGAGGTGTGCCACAAAAGTTTCGCATCCCGGCACAGTCTACGCTATCATTTCAAGTCCCTTCACTCGACGGAGCGACCCTTTAGCTGTGAGAAATGCCATAAGAAATTCGTTTTACGCACCCAATTGGTCTCCCATCTGCGTACCCATACGGGTGAATCGAAGCCACGAATTTACGCCTGTCCCAAGTGCACCAAGAGTTGGCCAACCAAATCGGATTTACGTACCCATATGCGTTCCCACAATCCCGATATGGAGCGACCCTTCAAATGTGATCGCTGCGAGAAGGCCTTCTTCACCCGGGGTCATCTGAATTCACATATTCTGGTCCACACTGGCGAAAAGCCCTATGCCTGCGATTTCTGTGATAAATGCTATCAGAGTGTGGGCAATCTCAACAATCATATGATGAGACAACATGCCGATATCATAGAAGCCGAACTAGAGAATGGAGTCGATGAGTGCTGA
Protein Sequence: MFSLLNHPLVCRCCLLKQPPLYHNIHDAHLSTELKILAPELHVEPNDGLTDVICDFCLHRLQDALDFRRKCLESEQVLLSRYEQWQRTVAAGEALALDDVLECLEREVGSLEEQRSKPVVKPVAHVAPLMEYVDFSSLGFQEPSIQCHSSNNIPLAASLSTWEAGTLNTPHHLAATLEEEPTFMASESSAPAPPPTKAKTTHSSTTPRSLHPCLECEKKFTRNFQLKLHMISVHGLGELRYQCEVCHKSFASRHSLRYHFKSLHSTERPFSCEKCHKKFVLRTQLVSHLRTHTGESKPRIYACPKCTKSWPTKSDLRTHMRSHNPDMERPFKCDRCEKAFFTRGHLNSHILVHTGEKPYACDFCDKCYQSVGNLNNHMMRQHADIIEAELENGVDEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00612317;
90% Identity: iTF_00612317;
80% Identity: -