Basic Information

Insect: Drosophila paulistorum
Gene Symbol: -
Assembly: GCA_018152135.1
Location: JAECXG010000606.1:10134471-10136094[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0032 0.25 12.0 0.3 3 23 168 188 167 188 0.98

2 12 3e-05 0.0023 18.4 3.9 3 23 198 218 194 218 0.94

3 12 2.3e-05 0.0018 18.7 4.2 1 23 224 246 224 246 0.98

4 12 2.1e-05 0.0017 18.8 5.6 1 23 252 274 252 274 0.98

5 12 9.9e-07 7.7e-05 23.0 0.7 1 23 280 302 280 302 0.98

6 12 5.4e-07 4.2e-05 23.8 2.0 1 23 308 330 308 330 0.98

7 12 2.5e-06 0.00019 21.8 0.9 1 23 336 358 336 358 0.99

8 12 2.6e-06 0.0002 21.7 6.7 1 23 364 386 364 386 0.99

9 12 9.4e-06 0.00073 19.9 0.5 1 23 392 414 392 414 0.97

10 12 5.4e-06 0.00042 20.7 5.3 1 23 422 444 422 444 0.98

11 12 1.6 1.2e+02 3.5 0.5 1 10 459 468 459 472 0.87

12 12 3.1e-06 0.00024 21.4 3.9 1 23 486 509 486 510 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0032	0.25	12.0	0.3	3	23	168	188	167	188	0.98
2	12	3e-05	0.0023	18.4	3.9	3	23	198	218	194	218	0.94
3	12	2.3e-05	0.0018	18.7	4.2	1	23	224	246	224	246	0.98
4	12	2.1e-05	0.0017	18.8	5.6	1	23	252	274	252	274	0.98
5	12	9.9e-07	7.7e-05	23.0	0.7	1	23	280	302	280	302	0.98
6	12	5.4e-07	4.2e-05	23.8	2.0	1	23	308	330	308	330	0.98
7	12	2.5e-06	0.00019	21.8	0.9	1	23	336	358	336	358	0.99
8	12	2.6e-06	0.0002	21.7	6.7	1	23	364	386	364	386	0.99
9	12	9.4e-06	0.00073	19.9	0.5	1	23	392	414	392	414	0.97
10	12	5.4e-06	0.00042	20.7	5.3	1	23	422	444	422	444	0.98
11	12	1.6	1.2e+02	3.5	0.5	1	10	459	468	459	472	0.87
12	12	3.1e-06	0.00024	21.4	3.9	1	23	486	509	486	510	0.97

Sequence Information

Coding Sequence: ATGGAAAGTACCCAGGAAAATGGCAAGCATTTGTGTCGAGCCTGTATGGATAGTTCTGTCACTTTGATCGAGATCTTCTCCAAGCAACAGGTGACGGATCTGTCTTATCCAGCCTTGCCGGATATGATAAACAATGTATTAGAGGAGAACTATCAAGTCAAGCAAGATGCACTACCTCAGCATATTTGCCTGGATTGTGTATTAGCAGCCGAAAATGCTTTTCATTTCAAACAGCGATGCCAAGAAAGTTTTAGCCACTTCTGTCAACTTTTGAAAGAGCAACGAATTACGGATGCAGAAAACCCAGTCAGGTTAAGAAAAGGAGCAAAAGAGACGGACATACATGTGACCAAGAACGTAATGGGTAGCTGTCAGTTCGTACAGGTGATGTTGGATGAGACAACAAAGGACGACGAAGTCATAGCTTTACAAGGTATATCTGATCCCAAATCAGATGGGGTTATTCTCAGAGCAGACAAGGAAGAGATGGAATCTCTGCTCTGTACGGAGTGTGGTATGACTTTAAAGTCGGAAAACTCTCTTAGCCTGCATATGGGTCGTCATAAGAAATTGGTAGATCGTTGTCATCTCTGTGAGACTTGCGGTAAGGATTTTAAGTCCAAGGCGCAATTGATTATCCACACACGTTCCCATACAGGCGAACGTCCGTTCAAGTGTCTTCATTGCGACAAGACTTACTCGCAGCGTACAACACTGCGTATGCATTTGGTTACCCACGGCAAGGAGCGTCCCTTCAACTGTAAACAATGTGATAAAACTTTCTATCTTCATCGCAATCTTAAAGCCCATCAGCGGCGACACAATGGCTTGCGTCCCTTCCAGTGTCCCAGCTGCCCGCTGACTTTTACCAAAAATGCGAATCTTAAGACCCATCTGCGTTTGCACACAGGAGAACGGCCCTTTAAATGTACAATATGTGATTTGAGTTTTCGACAGAAGCAGCACTTAATCGTTCATTTGAGGGGACATAACGATGATCGTCCCTACAAGTGCTTGCAATGTGACAAATCCTTTTTTGTCGATGCAAATTTAAAGAAACACATACGAGTCCACACCGGCGAGAAGCCGTTCAAGTGTGAAACCTGTGGACAGGCCTTTTCGCATAATCACCATCTGAAGTCCCATTTGCGTATCCATACGGGCGAGCGTCCCTACAAGTGCTCAGAGTGCGATAGGCTATTCGCCTCAAATCAATCCTTGCAAAAACATCTCATCTGGCATCGAGATAATAAGGACAAACCCCACAAGTGTCCACATTGCCCCAAGGGATTCGATAATTTCAGAAATTTGAAGTATCATCTTCGCACTCACATCAAAGCACCACCTAATCCTCCCGAGGAGAAAACTTACCCACACAAATGTCCTTTTTGCGATATTGGCTTCGATTTAAAGAGAATACTGGAAAAGTATTTAGTTACGCATAATGCGAGATCATATCAATGTGAACAATGTCCTAAAGGATTCTCCCATAGTCAGACGTTAAGGAAACACATTACAACAATTCACCATAATATTGAGAGGGATAAATACATAAATAATTGA
Protein Sequence: MESTQENGKHLCRACMDSSVTLIEIFSKQQVTDLSYPALPDMINNVLEENYQVKQDALPQHICLDCVLAAENAFHFKQRCQESFSHFCQLLKEQRITDAENPVRLRKGAKETDIHVTKNVMGSCQFVQVMLDETTKDDEVIALQGISDPKSDGVILRADKEEMESLLCTECGMTLKSENSLSLHMGRHKKLVDRCHLCETCGKDFKSKAQLIIHTRSHTGERPFKCLHCDKTYSQRTTLRMHLVTHGKERPFNCKQCDKTFYLHRNLKAHQRRHNGLRPFQCPSCPLTFTKNANLKTHLRLHTGERPFKCTICDLSFRQKQHLIVHLRGHNDDRPYKCLQCDKSFFVDANLKKHIRVHTGEKPFKCETCGQAFSHNHHLKSHLRIHTGERPYKCSECDRLFASNQSLQKHLIWHRDNKDKPHKCPHCPKGFDNFRNLKYHLRTHIKAPPNPPEEKTYPHKCPFCDIGFDLKRILEKYLVTHNARSYQCEQCPKGFSHSQTLRKHITTIHHNIERDKYINN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00503407;
90% Identity: iTF_00618569;
80% Identity: -