Basic Information

Insect: Drosophila paucipuncta
Gene Symbol: -
Assembly: GCA_035043875.1
Location: JAWNMP010000268.1:27277744-27279270[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00057 0.037 14.4 0.5 3 23 206 227 204 227 0.94

2 9 0.00041 0.027 14.9 5.2 1 23 280 303 280 303 0.98

3 9 0.84 55 4.5 0.0 1 23 311 334 311 334 0.91

4 9 1.1e-05 0.00069 19.9 3.1 3 23 339 359 338 359 0.97

5 9 0.057 3.7 8.2 3.3 3 23 367 389 366 389 0.91

6 9 9.6e-06 0.00062 20.0 2.3 1 23 395 417 395 417 0.98

7 9 3e-05 0.002 18.5 0.9 3 23 425 445 423 445 0.98

8 9 0.00058 0.038 14.4 3.9 1 23 451 473 451 473 0.94

9 9 0.00017 0.011 16.1 0.0 1 23 479 501 479 501 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00057	0.037	14.4	0.5	3	23	206	227	204	227	0.94
2	9	0.00041	0.027	14.9	5.2	1	23	280	303	280	303	0.98
3	9	0.84	55	4.5	0.0	1	23	311	334	311	334	0.91
4	9	1.1e-05	0.00069	19.9	3.1	3	23	339	359	338	359	0.97
5	9	0.057	3.7	8.2	3.3	3	23	367	389	366	389	0.91
6	9	9.6e-06	0.00062	20.0	2.3	1	23	395	417	395	417	0.98
7	9	3e-05	0.002	18.5	0.9	3	23	425	445	423	445	0.98
8	9	0.00058	0.038	14.4	3.9	1	23	451	473	451	473	0.94
9	9	0.00017	0.011	16.1	0.0	1	23	479	501	479	501	0.98

Sequence Information

Coding Sequence: atgcTAAAGACTTTGAAGCCGGACACATTTGCCGGCTTACCAAATGCCAAGTGCGGCGAGGTATATTTCCAGAGTCTAAACAGCTATCGCATCGATTGCACTTTCTGCGAGATGAAGAGCTTTGTGTTTGCCGACTTTCTGCTGCACATACAGAACGAGCACTTCGACAATGGACTGCTCAATGCGGAGGTGGTGGTGCCGAAGCAGGAGAAAATCGAAACTAATTCACCGCAATTAGTCAACAATCATCAATCGCAGCTCAATCCATTTACCTGGCATGAAGTGgccaatgatgatgataatgctgatgctgatgataaCAGTGAGCATGCATTTATCGAAGATCCAGAAGAACTGCAGCACAATGATGgggatgatgacgatgatgatgactatGATAATACGGCTGTGGAAGATCCGGTTGGGTTAACCAATAGCATTATGAAATGGGACAGAAGCAGCTTGGCGACGGATCAGGTGCGACAAACCCGCGCTCTTAAAATCGACTACAATGAGGAGTCGGACATTGAGAATACTGatggtcagcagcagctgcaggagcagcacgagcagcagcaggttgCATCTCTTAAAGCCAAAAAGGAGCAAATGGCCTGTGCGCAATGCAGTAAGGTGTATCAAAGCAAAACGACGCTGGAGCGTCACAtggagcaacagcacaaaCTGTCGATAAGTATCGTTATGGCCAACGCAGATGTCCACGATGATGATGGCGACGtggatgacgatgatgacgatgacaacgatgatgatgatgtcgacgtcgacgtgGACTATGCACCACCCAAGAAGCATGCTGTAAAGCcgcaaattgaatataaatgcGAGCACTGCGATAAAATCTATCATGGCAAATACACGTTGCGTCAGCATGTGAAGAGAGACCATGACATTAATCGGAGCGAAGCGTTTGTGTGCCTGGAGTGCAATGCACAGCTGCCACGTCTGCGCCAGCTGGACGAGCATGTGGTCAGTGTGCATGGTGGGGCGCCGTGTGTGTATTGCGGCCGTCGCTATAAGACACGCCACGAGCTAAAGCGTCACCAGCTGAAGCATACGAACGAACGGAATGTGGCATGCGATCATCCCGGTTGCGATAAACGCTTCTTCACCGTCCGTCACATGCGCAACCACAGCAAGGTGCACTCAGAGCAAAAGAATTTCGTATGTGAAAGCTGCGGCTACAGTTGCCGCAACAAGGAGACACTCCGTGTCCACCTGCGCAGCCATACGGGCGAACGTCCGTTTGGTTGCAAGGTTTGCGAGAAGCGTTTCCCATCCCATTCCGGATTGCGGGAGCACATGGCCATGCATTCGACAGAGCGGCCACATGTGTGTAAAGTGTGCGGCGCAACATTCTCCCGGCAGAAGGGCCTCTACCATCACAAGTTCCTTCACGCAGAGACGAAACAGTTTGTGTGCAAGCTGTGCGGGAATGCCTATGCACAGGCAGCCGGATTGGCTGGCCATATGCGCAAGCATCGCAATGATGAACTGAATTGCTAA
Protein Sequence: MLKTLKPDTFAGLPNAKCGEVYFQSLNSYRIDCTFCEMKSFVFADFLLHIQNEHFDNGLLNAEVVVPKQEKIETNSPQLVNNHQSQLNPFTWHEVANDDDNADADDNSEHAFIEDPEELQHNDGDDDDDDDYDNTAVEDPVGLTNSIMKWDRSSLATDQVRQTRALKIDYNEESDIENTDGQQQLQEQHEQQQVASLKAKKEQMACAQCSKVYQSKTTLERHMEQQHKLSISIVMANADVHDDDGDVDDDDDDDNDDDDVDVDVDYAPPKKHAVKPQIEYKCEHCDKIYHGKYTLRQHVKRDHDINRSEAFVCLECNAQLPRLRQLDEHVVSVHGGAPCVYCGRRYKTRHELKRHQLKHTNERNVACDHPGCDKRFFTVRHMRNHSKVHSEQKNFVCESCGYSCRNKETLRVHLRSHTGERPFGCKVCEKRFPSHSGLREHMAMHSTERPHVCKVCGATFSRQKGLYHHKFLHAETKQFVCKLCGNAYAQAAGLAGHMRKHRNDELNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00518632;
90% Identity: iTF_00557377;
80% Identity: iTF_00486048;