Basic Information

Insect: Drosophila parvula
Gene Symbol: kipf
Assembly: GCA_018904695.1
Location: JAEIIG010017844.1:7267-9400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.5e-05 0.0034 17.8 2.4 3 23 142 162 140 162 0.97

2 9 0.0031 0.23 12.0 2.0 1 22 168 189 168 189 0.96

3 9 0.0017 0.13 12.8 0.2 1 23 242 265 242 265 0.94

4 9 6.3e-06 0.00047 20.5 2.3 1 23 335 357 335 357 0.98

5 9 0.0024 0.19 12.3 0.8 2 23 364 385 364 385 0.97

6 9 1.3e-05 0.00097 19.5 1.7 3 23 477 497 475 497 0.97

7 9 4.5e-05 0.0034 17.8 7.1 1 23 503 525 503 525 0.99

8 9 8.2e-05 0.0062 17.0 0.4 1 23 533 556 533 556 0.97

9 9 0.00072 0.055 14.0 1.8 2 23 567 588 566 588 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.5e-05	0.0034	17.8	2.4	3	23	142	162	140	162	0.97
2	9	0.0031	0.23	12.0	2.0	1	22	168	189	168	189	0.96
3	9	0.0017	0.13	12.8	0.2	1	23	242	265	242	265	0.94
4	9	6.3e-06	0.00047	20.5	2.3	1	23	335	357	335	357	0.98
5	9	0.0024	0.19	12.3	0.8	2	23	364	385	364	385	0.97
6	9	1.3e-05	0.00097	19.5	1.7	3	23	477	497	475	497	0.97
7	9	4.5e-05	0.0034	17.8	7.1	1	23	503	525	503	525	0.99
8	9	8.2e-05	0.0062	17.0	0.4	1	23	533	556	533	556	0.97
9	9	0.00072	0.055	14.0	1.8	2	23	567	588	566	588	0.97

Sequence Information

Coding Sequence: ATGGAGAATGTCTGCCGGACGTGCATGAACGACTCTGTCCTCCTGGTGAATATCTTCTCAGAGGTGCGTGATCCGGCTCTCGAACAGCCGAATAGGAGTTTCGCCCACATCCTGAGTGAGTGCACCAATCGCTCCGTTACGCCGGACGACTGCCAGTCGCAGTTTATCTGCCTGGCGTGCATCCAAGCCGCCCAGATCGCCTACAGGTTCAAGCGCCAGTGCGATCGCACCTACCAGCACTTTTGCGAGCTCCAGGCCAGGTCATCCACTACACAGGATCAGGATAACCAGCCAGAGAATGGCCCGCAAGCGGAACAGAAACCAGTTACTAGAGCCTCAAGGCGTAGTGGTGGTACTAACCACAGACAACTGGAGCTGCCCCAATCCATCAATGGAACTGAAGGAATGGGAAAGCGCTTTGGGTGTCCTCAGTGCCTTAAAACATACAAGTACAAACATAACTTGACTCGACACCTACTCATCCACAACTCCAAGCCGACGCATCAGTGTACCCACTGCTCAAAGGGTTTTTGGCGGAAAGATAGCTTCATCGGGCACATGCGCTCCTGCCGTTGGCGCACTACGACAATTTCCAATGTTTCTCAGCTGGAACACAACGACGAGAATCCATTATCTCTTCCAGATCTCCTCCCCTCGAGGATCAACGATGTTGATATGATAAACATGGAAACAAGCTTAGTTTCCAGGCCCAGTGTCTATAAACACATCTGTGTGGATTGTTTGGAATCCTTTGACCAAGAAGACGATCTCAAAATGCATATATTGCTTAATCATGATCTCAATATTTCGAGTCCTGAGGAATCCTTAACGTTGGGACGCGACTGTGAGCCACGATTTCGGACCCTTAGCCAAGAATCTACCATTGAAAGCAGTGAGGATATTCAGACTTCAAGGAAAAATGAAAGTGGATTCGATCAGGAAACACAATCATCAGAGCAGAGCGAGAAACAAAACAGGCTACGTAAGTCGGAGAGGAAGCGCTTTGTTTGTCCATATTGCAAATGCTCTTTCAATATGAAAACAAGCCTGGAGCGACACATAGCCACCCACGACGAAGAGGACTCGCGTACCTGCCGTCATTGCGGGGCCATATTCAGCGAGCTCAGTGTACTCAAACTCCATCTGCGTGACCACGAAGAAAAAGCTGTTCATGTTCCAGATCTCCCCGACTCGATGGAGAATAATAATAACTCCGAGGATACCAATATCAATGCCAACATTTCTTTACGAACGTGGGACCTACCAGTTCTGGATCTTAGCCTAGATTCCAGCAGAAAAATATGTGATGAAAATCGATCGACATCAAGCCAACGAGATAGTGGATTTGATCAGGAAACACCTATATCTATGCAGGGCGAAAAACAACACCAATGCCTGATGCCTAATGGTGATAAAAAATGGATGGCGTGTCCCCATTGCCCCCGTAGATTCCAGAACAAAGACTCCATGCAGCGTCACATATACACCCACATTTGCCAGCCGAGGTACAAGTGTCCCATCTGCCAGAAGACTTACCATCGGAACGATTGCTATAGCCGACACCTTCGCACCCACAACGATGATGGAGGCGCCGTGTATATCTGCAATCAGTGCCCGGCCGCATTTATTGACAGGTTCAGCTTGACGCGGCACAATCGAAAATTGCATGGATCGGACGTGAAAACTCATGGCGTTGTAAAGTGTAGGTACTGTGGAAAGAAATACCAGAAAATCAAATCACTCCAAAAGCACGAAAGAGGTCATCTGTAG
Protein Sequence: MENVCRTCMNDSVLLVNIFSEVRDPALEQPNRSFAHILSECTNRSVTPDDCQSQFICLACIQAAQIAYRFKRQCDRTYQHFCELQARSSTTQDQDNQPENGPQAEQKPVTRASRRSGGTNHRQLELPQSINGTEGMGKRFGCPQCLKTYKYKHNLTRHLLIHNSKPTHQCTHCSKGFWRKDSFIGHMRSCRWRTTTISNVSQLEHNDENPLSLPDLLPSRINDVDMINMETSLVSRPSVYKHICVDCLESFDQEDDLKMHILLNHDLNISSPEESLTLGRDCEPRFRTLSQESTIESSEDIQTSRKNESGFDQETQSSEQSEKQNRLRKSERKRFVCPYCKCSFNMKTSLERHIATHDEEDSRTCRHCGAIFSELSVLKLHLRDHEEKAVHVPDLPDSMENNNNSEDTNINANISLRTWDLPVLDLSLDSSRKICDENRSTSSQRDSGFDQETPISMQGEKQHQCLMPNGDKKWMACPHCPRRFQNKDSMQRHIYTHICQPRYKCPICQKTYHRNDCYSRHLRTHNDDGGAVYICNQCPAAFIDRFSLTRHNRKLHGSDVKTHGVVKCRYCGKKYQKIKSLQKHERGHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -