Dpav005254.1
Basic Information
- Insect
- Drosophila parvula
- Gene Symbol
- -
- Assembly
- GCA_018904695.1
- Location
- JAEIIG010033789.1:37488-40750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.16 12.5 0.8 1 23 214 237 214 237 0.97 2 12 9.7e-05 0.0073 16.7 5.9 1 23 242 265 242 265 0.94 3 12 4.7e-05 0.0036 17.7 2.1 1 23 270 292 270 292 0.98 4 12 9.1 6.8e+02 1.1 6.5 1 23 298 322 298 322 0.95 5 12 0.0013 0.1 13.1 6.3 3 23 333 353 332 354 0.94 6 12 0.015 1.1 9.8 0.2 1 23 360 383 360 383 0.95 7 12 0.012 0.88 10.2 0.1 2 23 394 416 393 416 0.93 8 12 0.00019 0.014 15.8 0.3 1 23 444 466 444 466 0.97 9 12 8.2e-06 0.00062 20.1 4.0 1 23 473 495 473 495 0.97 10 12 0.00023 0.017 15.6 0.1 2 23 502 523 502 523 0.97 11 12 0.00027 0.021 15.3 1.3 1 23 530 552 530 552 0.99 12 12 0.00013 0.01 16.3 3.7 1 23 558 581 558 581 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTGTGCGACTTCGAAAATGGCAGCAACAACTTCCTGGACCTCTACCATTCCAACTGCTGGCCAAGGGAAATGGCCCAGGTACGCCAGCAGTTCCTCAACTGGAATCTAAAGATCTCACCTAATGACGGACTGCCCCAGAAGATTTGCAGCGACTGCTTCACCAAGTTCTGCTCCATTAACGCTTTCCGAGTGGCCTGCCAGGAGGCGCAGTTGAAGCTATCAAACATTTACGATAAGATCGATGCCAGCAGCTTGGAGGATGATCAGCAGGAGGACTCAGACCAAGCAGAGAATTCTCCAGGAACGGGAACCATCATAACAACCACAACAACGACGGTTTCAGACGAAACACAACCAACAAACACTGCCACTGAACCCATACAGATTTTTGTGGATGAACTAGACATCGAAGAAGACCCTGAAGAGGCGGCCGAGGAGGAGGACGCGGAAGCGGAAGCGGACCAGCAACCACCGGAGGAATCTGCCCCCCCAGAACTGACCATTAGCTATGCCTGCAAGTTTTGCTTGCAGCCGCAGGAGAGCTACCAGCTGCAGCAGCATTTACTGGAGCACATCAATGCCAGCCACGATCCGGAGCTGCCGTACAACTGTCCGGAGTGCGAGGAGCGATTTCAGGATGCCGCCTCCCGCACTGTGCACCTCAAGAGCTGTCATGTCGAGAAGCAGCACATCTGCCAGGTGTGCGGCAAGAAGTATAGCGATCGGCACAATTTGCGCCATCATGTCGAGAAGTACCATTCGGAGACGGACTTCGAGTGCGGCCTGTGCGAGAAGCGATTCTTTACCCGAAAGAGTCTCAACTACCATATGAAATGGCACAATCCGGAGCGCCAGTTCAAGTGCCGCCACAGCGGCTGCGAGCGACTGTTCATTAGCCAGAGGCACCTTAAGTGCCACGAGGCCACGCACACGGGCACCAGTGCCAGGAAGAGCGAGCACTGCGGCTTCTGTGGGAAGACTTTCATACACCTGAAGACCCTGCGCTGGCACATCTATAAGCATCACGGCGGCGAGAAGCCCTTCAAGTGTGCCAACTGCACGGAGGTTTTTGGGTCATATGCGGAGAAGCGGATCCATATGCTGGAGCAGCACAGGGAGAACTTGACGGCCATCGAACGGAGTGAGTGCATGCTGTGCCGCCAGGCCTTTACCAGCGAGCAGGATCTAGTCCTGCACATGTCTGCCGAGCATCTGCAGCCAGCCGGTACTCCGGTAATTGCCAACAACAAGCGCGTCATCCAGAAGAAGCGGGAGCGCCAGTATTCCGGACTCTTTCAGTGCGACAGTTGCACCCAACGATTCAATATGAAATCTGCGCTGGAGCGGCATGCGGCTGTCCATTCGGAGAAGGATCGACCGCACGCCTGTCCGCACTGCTCGAAGAGATTCAAACGGGCCCAGGACATGAAATGGCACATCAAGACGCACGAGAAGGAGAAGCTCAATGTGTGCGATGTCTGCGGCAAGGCCTTCGCCCTGAAGTATGTGCTCACACAGCATCGCTTGAGTCATGAGATCTTGGAGAAGAACTTTAAGTGCAACGTCTGCGGTCGCTCCTATCTGTTTGAGAAGTCTCTGCGGCTCCATCAGCGGGTTCACACCGGAAAAACCTACTATAAATGCGATCTCTGCCAAGAACGATTTGTCACGCACATCAAACTAAAAACTCACATGCAAAAGACACACGCCTCTCAGCCTAATATAGCTGATCCTCTGGATGATTTGATAAACATTGTGATTTCCTAG
- Protein Sequence
- METCRTCAISMFVCDFENGSNNFLDLYHSNCWPREMAQVRQQFLNWNLKISPNDGLPQKICSDCFTKFCSINAFRVACQEAQLKLSNIYDKIDASSLEDDQQEDSDQAENSPGTGTIITTTTTTVSDETQPTNTATEPIQIFVDELDIEEDPEEAAEEEDAEAEADQQPPEESAPPELTISYACKFCLQPQESYQLQQHLLEHINASHDPELPYNCPECEERFQDAASRTVHLKSCHVEKQHICQVCGKKYSDRHNLRHHVEKYHSETDFECGLCEKRFFTRKSLNYHMKWHNPERQFKCRHSGCERLFISQRHLKCHEATHTGTSARKSEHCGFCGKTFIHLKTLRWHIYKHHGGEKPFKCANCTEVFGSYAEKRIHMLEQHRENLTAIERSECMLCRQAFTSEQDLVLHMSAEHLQPAGTPVIANNKRVIQKKRERQYSGLFQCDSCTQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTHEKEKLNVCDVCGKAFALKYVLTQHRLSHEILEKNFKCNVCGRSYLFEKSLRLHQRVHTGKTYYKCDLCQERFVTHIKLKTHMQKTHASQPNIADPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- iTF_00491676;
- 80% Identity
- -