Dpav008311.1
Basic Information
- Insect
- Drosophila parvula
- Gene Symbol
- -
- Assembly
- GCA_018904695.1
- Location
- JAEIIG010029508.1:3341-4660[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.048 3.6 8.3 0.1 2 23 97 118 96 118 0.80 2 12 0.001 0.079 13.5 7.0 2 20 122 140 121 143 0.94 3 12 8.6e-09 6.5e-07 29.5 1.1 2 23 150 171 149 171 0.97 4 12 0.00037 0.028 14.9 0.3 1 19 177 195 177 196 0.97 5 12 6e-05 0.0045 17.4 0.4 1 23 217 239 217 239 0.98 6 12 7.3e-07 5.5e-05 23.4 2.2 1 23 245 267 245 267 0.98 7 12 0.0017 0.13 12.8 0.5 1 23 273 295 273 295 0.97 8 12 0.0038 0.29 11.7 2.1 1 23 301 323 301 323 0.98 9 12 5.6e-05 0.0043 17.5 1.1 1 23 329 351 329 351 0.96 10 12 0.00012 0.0089 16.5 0.1 1 23 357 379 357 379 0.99 11 12 2.4e-07 1.8e-05 24.9 2.1 1 23 385 407 385 407 0.98 12 12 1.6e-05 0.0012 19.2 8.2 1 23 413 435 413 435 0.99
Sequence Information
- Coding Sequence
- ATGGAGTGTCAGGATAAGACTGGAACATTGGACTTCCAAGTGAAGCAGGAAGCAACCGAAGAAGATTTGTTGGAGCACGAGAAGCTACACCAGTGTCAAGTTAAGAACGAGCCTATCGACGACTCATGCGAGGAGGAGGACTACCCGCTTTCGGACGATGAACTAGATCTGTCCGATGGCAAAATGAACGGCGAAGGAATGGAAATGCCCTACAAGGGCGAATCTAGCAAGACTTTTAGAGAACCATTCAGCCCCAGATCACATATGAAAACTGAAGCCGGATTATACCAGTGTCCCAATCGCCCGCAATCATTCACGAAGCAGGAGAGCCTTCGTCGCCATCTGGGGGCGCATGAGCCGTTGCAGTGTCCACACTGTCCCAGGACCTTTAGTAAACCCTGTACCCTCACGGTACACATGCATTGTCACACGAAAGAGGGTTCGCTCAGGTGTCCCTACTGCGAAAAATCCTTTTCCGTACTCTCAAATCTTACGCGACACCAGCGAACGCACACGGGCGAAAGACCGTTCAAATGTGATCTCTGCCAGAAGACCTTTGCGGAGAAGCGTACTCTGCAAATTCACGGTGTTCAGTGCGCAAAGTTTTCGGAGAAATTATCTCTTTTGAAACAAGTACGTTCTCGTCCCTATACGTGTTCGCAGTGCACCCAGTCTTTTTCGGAAGAAACCGATCTCAACCAGCACGTCCTCGTTCATTCGGGGGAGAGGTCGCACAAATGCTCCATTTGTGAGAAGATCTTCATAAAAAACTCCAGTCTTCAGCGACATCTTCGATGGCACAAGGACGAGCACACGTTCAAGTGTTCCCAGTGTCCCAAGTCTTTTCTGGAGGAACAGCAGCTCACCGAACACACTCTCATCCATGCGGGGGTCAATCCGTTCAAGTGCTCCCAGTGCCCGAAGACCTTTCTGCTGAAGTCCATTCTTGAGCGGCATTTCCGAACGCACACCGGGGAGCGACCGTACAAATGCTCTCAGTGTGAGAAATCTTTCTCCCTAAGTAATCTCCTTAAGCTGCACACCCTCGCTCACTCGGGTGAAAGTCCCTACCAGTGTCCCCAATGTCCCAGGTCGTTTCTCGGAAAGCAACCCCTAGCTAACCACATACGGACGCATACTGGCGAGCGACCGTTCAAATGTCCGCATTGTCCGAAGGATTTTACGCAAAAGTCGGGCCTCAAAGGACATCTTAGAAATCATACGGGAGAACGGCCGTATAAATGTGACACCTGCCAGAAGTCCTTTACACATAAACACTACCTCACAAGCCACATCTTCACTCACACGGCGAAGTCTTAG
- Protein Sequence
- MECQDKTGTLDFQVKQEATEEDLLEHEKLHQCQVKNEPIDDSCEEEDYPLSDDELDLSDGKMNGEGMEMPYKGESSKTFREPFSPRSHMKTEAGLYQCPNRPQSFTKQESLRRHLGAHEPLQCPHCPRTFSKPCTLTVHMHCHTKEGSLRCPYCEKSFSVLSNLTRHQRTHTGERPFKCDLCQKTFAEKRTLQIHGVQCAKFSEKLSLLKQVRSRPYTCSQCTQSFSEETDLNQHVLVHSGERSHKCSICEKIFIKNSSLQRHLRWHKDEHTFKCSQCPKSFLEEQQLTEHTLIHAGVNPFKCSQCPKTFLLKSILERHFRTHTGERPYKCSQCEKSFSLSNLLKLHTLAHSGESPYQCPQCPRSFLGKQPLANHIRTHTGERPFKCPHCPKDFTQKSGLKGHLRNHTGERPYKCDTCQKSFTHKHYLTSHIFTHTAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -