Basic Information

Insect: Drosophila parvula
Gene Symbol: -
Assembly: GCA_018904695.1
Location: JAEIIG010037511.1:2505-4321[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.18 12.4 4.1 3 23 236 256 235 256 0.98

2 12 3e-06 0.00022 21.5 3.1 3 23 268 288 266 288 0.96

3 12 6.7e-06 0.0005 20.4 1.8 1 23 294 316 294 316 0.99

4 12 1.8e-06 0.00013 22.2 2.0 1 23 322 344 322 344 0.98

5 12 2.4e-07 1.8e-05 24.9 0.7 1 23 350 372 350 372 0.98

6 12 1.3e-05 0.00098 19.5 5.2 1 23 378 400 378 400 0.99

7 12 3.5e-08 2.6e-06 27.6 3.2 1 23 406 428 406 428 0.99

8 12 1.1e-06 8.3e-05 22.8 5.5 1 23 434 456 434 456 0.99

9 12 5.6e-05 0.0043 17.5 3.8 1 23 462 484 462 484 0.98

10 12 0.0046 0.35 11.5 4.2 1 23 492 514 492 514 0.98

11 12 0.00075 0.057 13.9 1.1 1 23 524 546 524 546 0.97

12 12 0.00019 0.014 15.8 2.0 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.18	12.4	4.1	3	23	236	256	235	256	0.98
2	12	3e-06	0.00022	21.5	3.1	3	23	268	288	266	288	0.96
3	12	6.7e-06	0.0005	20.4	1.8	1	23	294	316	294	316	0.99
4	12	1.8e-06	0.00013	22.2	2.0	1	23	322	344	322	344	0.98
5	12	2.4e-07	1.8e-05	24.9	0.7	1	23	350	372	350	372	0.98
6	12	1.3e-05	0.00098	19.5	5.2	1	23	378	400	378	400	0.99
7	12	3.5e-08	2.6e-06	27.6	3.2	1	23	406	428	406	428	0.99
8	12	1.1e-06	8.3e-05	22.8	5.5	1	23	434	456	434	456	0.99
9	12	5.6e-05	0.0043	17.5	3.8	1	23	462	484	462	484	0.98
10	12	0.0046	0.35	11.5	4.2	1	23	492	514	492	514	0.98
11	12	0.00075	0.057	13.9	1.1	1	23	524	546	524	546	0.97
12	12	0.00019	0.014	15.8	2.0	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: ATGGAACGATTGGAGGGTGCCAGCATGGAAAAGAATTGCAGAGTCTGTGCCGGCCACTCGACGATATTGGTAGACCCCTTTTCAACGGAGATCTCCGATCCACCTATTTCGGAAATGCTCAATTCGTTTCTGGACGAGAACTGTCGCGTCAATCGTGATGCTCTGCCCCAGAAAGTCTGTCCCGTCTGCCTGGTTGCCGCACAACAAGCGTTCCACTTCAAATACAAATGCGAGGAGAGCTACCGTTACTTTTCCCACCTCGTCACGTCGGCAGCCTCCGCCGACGCGGCTCCGGGTAAGAAGCGAGGGAGGAGGGCTGAGAAGGAGCCCCTGATTGCCTTCGAGATGGTCGGCTGTGAGGATCCGCTGGACACCACAGAGCTGCCGAAAAGAGAAAGCGAAGATGATACACTTGTTGTGAAAGATGATATCGAATCAGAGCCGACCGAGAGTCAGTCAAATGAGGGGCAGGTCGGGCAAGAACTGCACGTAATGCTGGAATGTTCCAAGCATAATAATATAAAGGCAGAGGAGGTGCAGATATCCAACGACGAAGGGGACGATGAAGATGACGAGGAGGATGACGATGAGGATAACGACGAGGGAGATGATTGGTCCGCTGAATCCGAAGACGAAGATGAGCACTGGATTGTTAGCGATTCAGCGACTAAGCCAGGGCCTGTAGTAAAGGATCTATCGCTGCTATGCACCGAGTGTGGATTGACCTGCAAGTCGCACAAGTTGCTGTCCAGGCACATTGCGCGCCATAGGGAGCAAGAGGATCCAAAACGACTGCATCTGTGCGACACCTGCGGCCGGGGATTTAGGACCAAGTCGCAGCTCACAATCCATACGCGCAGGCACACGGGAGAGCGACCCTTCAAATGCAACATCTGCCCGAAGACGTACACTCATGGTCCGACGCTCAAGATGCATATGCTGACCCACGACGAGACGAAGGCTCACAAGTGCTTGGACTGCGAAAAGTCCTTCTACAGCATCTCCAACCTGAGGGCCCATCAGCGTTGGCATTCGGGCGAACGACCCTATCAGTGCCCCGACTGCCCGCAGACCTTCACCAAGAATTCGGGACTGAAGTTGCACCGGCGCCTTCACACCGGCGAGCGTCCATATAAGTGCCACCTGTGCGACCAGGGGTTTGTCCAGAACCATCATTTGGTCACACATTTACGCGTGCACAACAAGGATCGGCAGTTCAAGTGCCCGGACTGCGACAAGTCATTCTTCGAGAAGTCCAACATGAAGAAGCATCAGCGCACCCATTCGGGCGTGAAGCCGTTCCAGTGTGAGGAGTGCGGTCGCGGGTTCTCGCACAACCATCACCTCAAGAGCCACGTCCGTGTCCATACCGGCGAAAAGCCCTACAAGTGCGACCATTGCAGCAAGAGCTTCTGCGCGAATCAGTCGCTCGCGAAGCACATACTCTGGCATGCAGAGAACCAGGATCGGGCCCACAAGTGCTCCAAATGTCACAAGGGCTACGACACAATCCAGGGCTTGCGGGCACACGAGAAGAAACATCGGCGACCAGATGAGCCAAACACTCTGTACCAGTGTCCGCATTGCGATGTCAAATTTGCCCTGAAAAAGACCATGGACAAGCACATTGGCAGTCATAAGATCAGACCCTATCCATGTTCACAATGCTCGGAGGGGTTCTTCTCCCAAAAGAGCTACAAGAAGCATCTGCGGCTGCATAATCTCAAGAAATAG
Protein Sequence: MERLEGASMEKNCRVCAGHSTILVDPFSTEISDPPISEMLNSFLDENCRVNRDALPQKVCPVCLVAAQQAFHFKYKCEESYRYFSHLVTSAASADAAPGKKRGRRAEKEPLIAFEMVGCEDPLDTTELPKRESEDDTLVVKDDIESEPTESQSNEGQVGQELHVMLECSKHNNIKAEEVQISNDEGDDEDDEEDDDEDNDEGDDWSAESEDEDEHWIVSDSATKPGPVVKDLSLLCTECGLTCKSHKLLSRHIARHREQEDPKRLHLCDTCGRGFRTKSQLTIHTRRHTGERPFKCNICPKTYTHGPTLKMHMLTHDETKAHKCLDCEKSFYSISNLRAHQRWHSGERPYQCPDCPQTFTKNSGLKLHRRLHTGERPYKCHLCDQGFVQNHHLVTHLRVHNKDRQFKCPDCDKSFFEKSNMKKHQRTHSGVKPFQCEECGRGFSHNHHLKSHVRVHTGEKPYKCDHCSKSFCANQSLAKHILWHAENQDRAHKCSKCHKGYDTIQGLRAHEKKHRRPDEPNTLYQCPHCDVKFALKKTMDKHIGSHKIRPYPCSQCSEGFFSQKSYKKHLRLHNLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525996;
90% Identity: iTF_00525996;
80% Identity: -