Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-12 4.3e-09 35.9 0.0 1 41 75 116 75 119 0.90

2 4 1.1e-14 2.6e-11 43.1 0.1 2 39 130 167 129 170 0.94

3 4 2.6e-18 5.8e-15 54.7 0.0 1 45 184 229 184 229 0.98

4 4 2.6e-20 6e-17 61.1 0.0 1 43 236 279 236 280 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-12	4.3e-09	35.9	0.0	1	41	75	116	75	119	0.90
2	4	1.1e-14	2.6e-11	43.1	0.1	2	39	130	167	129	170	0.94
3	4	2.6e-18	5.8e-15	54.7	0.0	1	45	184	229	184	229	0.98
4	4	2.6e-20	6e-17	61.1	0.0	1	43	236	279	236	280	0.97

Coding Sequence: ATGTACAATTCGGATACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCCAGGTGGTGCTGGTGGTGGTGGGGGCATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTATGGCAACGTGCACATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCTTTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCATTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTAGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAATTTGGCATACCAACAGGAACTCTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCAAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCAAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGGTACGTACATAG
Protein Sequence: MYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSVRT

Sequence clustering based on sequence similarity using MMseqs2