Dpar001373.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- -
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000070.1:2420771-2423170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.66 49 4.8 7.8 2 21 287 306 286 308 0.94 2 12 0.001 0.075 13.7 3.3 1 23 314 339 314 339 0.95 3 12 0.00013 0.0094 16.5 0.4 1 23 346 371 346 371 0.94 4 12 0.026 2 9.2 4.8 1 23 379 401 379 401 0.95 5 12 5.5e-05 0.0041 17.6 1.1 1 23 408 430 408 430 0.98 6 12 0.0013 0.1 13.3 1.0 1 23 436 458 436 458 0.98 7 12 0.92 69 4.4 6.9 1 23 464 487 464 487 0.96 8 12 0.038 2.9 8.7 4.9 1 23 493 515 493 515 0.95 9 12 0.0011 0.082 13.6 0.7 1 23 521 543 521 543 0.98 10 12 3.9e-06 0.0003 21.2 0.1 2 23 622 644 621 644 0.94 11 12 0.0037 0.27 11.9 5.2 1 23 650 672 650 672 0.97 12 12 0.00077 0.058 14.0 3.0 1 23 678 700 678 700 0.98
Sequence Information
- Coding Sequence
- atggacGAGGAGGCAACGGGTCCAGCAGATACGTTATGCCGAACTTGTTTGTCCAACCTGAAACCAGATGAAACCTTCGATCTATTCTTGGTTCCGGGCCTGGCCAagaaattgtgtgtgtgcacttcgTTGCCCGTGGAGCACCAGGATGGATATCCTAGAAACCTGTGCAGCACCTGCTACAGCCGTCTAGACGAGGTGCACGACTTCCAAAAGCAGTGCGTGGATTCGGTGCAGAAGTTTAAGGAGCTTATGACGCGAAGCTGCTTTATAATCCGCACACTCCCGGATGACTTGCCCTACTTGGCGAATTCTGCTGGCCAGGAGGAGGAGCAAACTAGCTTTGATCCACTGCTAAATACAAAAGTCGAAGTTGATAACGAGGAGGATGTGTTGAAAAGAATTGAAGATGTCGATAAGGAAACCGAGGAAGTGGAGCACTTGGACGACAGCAGACGGGACTCCATCAAAGAGGATGTGGATGACAGCAATTCCGATGATGAGAAGCCGCTGAAACGCTTACGAAGTAGCAAGAGAGTGGCCAACACCAAGACCAAGAAGAGTGATGAACAATCTGTTCCAGAAACGTTTGATCCACTGCTCGGCGCCAAGGACTTGAGTAGCAGTCAggatatatttaaaagaattgAAGAGGTAGACAAGGAATCCGAAGAGGATAATAATGTAGAAGGTACTATTAACGACAGCTGTAGTGACTTTAATCAAGACGATGCGGAGGACAGAGATTCAGACGAAGAAACGCTGTGCACGAAGGGCAATAAGAATgaatcaaagaaaaaaacaatgcgGAAACGTAAGCGTACTGCCCCAGCTGATGGTCAGCTTCCAAGGCTCATCAAATGCCACATTTGCCAGCAGAAGTTCAAGAAAACCGCGTGCTACGAGGAGCACATGAAGTGCCACAGTGACCAACTGCCATACCAGTGTGAAGCCAAGGACTGTCAGCGGGGATTCACGACCACTACTGGACTGAAGCATCACATGGAGCACACGCACCCGGAACTATGTAATCTACATCCCTGCTCTGTCGAGGGATGCGGTGAATCCTTTGCTCAAACTCGCATGCTCACCAAGCATCTGCGACAGGAACACAACATTGCCAAGCCCATAATCCATCCTTGCTCCAAGTGTGAAAAGAAATTCCGTTGTCCAATGGCGCTAAAGAAGCATATGTATGACCACACGGGGGAGGAGCTGCCCTTTGTCTGCAGAGTCTGTCAGAAACGCTTTCGGGTCAATACCGAGCTCCGGGATCACCTTTTGCGCCATGCGGGAATCAAAAAGTTTGTGTGCTTCCATTGCGGCGTAGGCAGGACCACAAAGCAAGAGCTGGACAAGCACATGCTAATCCATACGACGGAAAAGAAGTTCAAATGTGATCACTGTGAGCACACGTCCCATAACAAGCAGCGGATGAATAAGCACATCAAGGCGGTGCACATGAAGATTAGGGACTTTGTGTGCCAATATTGCCCCAAAACCTTTGCCAGTTCCTGTGCCTGCAAGAACCACGAGAAGCTCCACACGGGCGATGACTGCTTCGAGTGTGTCATCTGCGGTCGGAAGTTCCTTTTTGAAAGCAGATTAATCAAACACTTGCGGTCACATGCGCATCGCACGCTCAAAAACACGGAGAGCAAAACGAAGCAGGTAACGGATCAGAAGGAATTGAAGAAAACTGCGGATGAAACAGCAGATGTTCCAATCAAGCCAAAGGATCCACGTCGCGTGGAGGTGGTGGATATTTCTCAATTGGCTGGCACCTCCGTTAATCCCATTCCTTTGGTGTCGGTGTCCTCGTGGGCCACGCCCGAAGATTATGTCAAAAACGAGGGACAACTCAACTGTGCGGACTGTGGCAAGAGTTTCACTACACTGGGCGCTCTAAAGAGCCACATCAAGGCCGTTCACGACAAGATCAGGGACTATGCCTGTCGCTTCTGTCCCAAGCGATTCAGCAAGACCTACACCCTCAAGCATCACGAGTATACGCACACGGGAGAGAAGCCCTACGAGTGCTCGATCTGCTCCCAGCGCTATAGACACGATGCCACTTTCAGGAAGCACATGGAATCCCACAACAGACCACCTAAAGAACCAAAGGAGCCTAAGAAGTCAAAGCGTCAGGCACAATATCCCCCAGAGCCTCGGGTGAGACTAAATACGGAACCGCAGAAGAACTATGAGCAGTACGAGGATCCCGATGCGGAGCGAGCGGCGGCTACGGCTCAGTTGTTGGCTCAGCAGCAAGATGAGAGCGAGGCCAAACGCAAAGCGGAGGCCAAAGCTCGGGTGATCCAAGAGGCGGCATGTGAGCAGCtccagcaactgcaacagttgcCGGTTCCCTACGAGAGCGTTCCCAAAGAAACATCTTAA
- Protein Sequence
- MDEEATGPADTLCRTCLSNLKPDETFDLFLVPGLAKKLCVCTSLPVEHQDGYPRNLCSTCYSRLDEVHDFQKQCVDSVQKFKELMTRSCFIIRTLPDDLPYLANSAGQEEEQTSFDPLLNTKVEVDNEEDVLKRIEDVDKETEEVEHLDDSRRDSIKEDVDDSNSDDEKPLKRLRSSKRVANTKTKKSDEQSVPETFDPLLGAKDLSSSQDIFKRIEEVDKESEEDNNVEGTINDSCSDFNQDDAEDRDSDEETLCTKGNKNESKKKTMRKRKRTAPADGQLPRLIKCHICQQKFKKTACYEEHMKCHSDQLPYQCEAKDCQRGFTTTTGLKHHMEHTHPELCNLHPCSVEGCGESFAQTRMLTKHLRQEHNIAKPIIHPCSKCEKKFRCPMALKKHMYDHTGEELPFVCRVCQKRFRVNTELRDHLLRHAGIKKFVCFHCGVGRTTKQELDKHMLIHTTEKKFKCDHCEHTSHNKQRMNKHIKAVHMKIRDFVCQYCPKTFASSCACKNHEKLHTGDDCFECVICGRKFLFESRLIKHLRSHAHRTLKNTESKTKQVTDQKELKKTADETADVPIKPKDPRRVEVVDISQLAGTSVNPIPLVSVSSWATPEDYVKNEGQLNCADCGKSFTTLGALKSHIKAVHDKIRDYACRFCPKRFSKTYTLKHHEYTHTGEKPYECSICSQRYRHDATFRKHMESHNRPPKEPKEPKKSKRQAQYPPEPRVRLNTEPQKNYEQYEDPDAERAAATAQLLAQQQDESEAKRKAEAKARVIQEAACEQLQQLQQLPVPYESVPKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471075; iTF_00478944;
- 90% Identity
- iTF_00471075; iTF_00478944;
- 80% Identity
- -