Dpar010220.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- PZF1
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000174.1:10482377-10486243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.069 5.2 7.9 0.2 3 23 306 327 305 327 0.91 2 10 0.00025 0.019 15.6 0.3 6 23 336 353 336 353 0.99 3 10 9e-06 0.00068 20.1 0.2 1 23 359 382 359 382 0.98 4 10 0.0002 0.015 15.9 0.9 1 23 394 416 394 416 0.98 5 10 9e-05 0.0067 17.0 3.0 1 23 423 446 423 446 0.96 6 10 1.3e-05 0.001 19.6 1.8 1 23 452 474 452 474 0.96 7 10 0.058 4.3 8.1 0.5 2 23 483 504 482 504 0.96 8 10 4e-05 0.003 18.1 2.8 2 23 510 532 509 532 0.95 9 10 5.7e-08 4.3e-06 27.0 0.7 2 23 539 560 538 560 0.97 10 10 0.0002 0.015 15.9 4.4 1 23 566 589 566 589 0.96
Sequence Information
- Coding Sequence
- ATGCTCTGTCGCTTGTGTTTGAAAAACATAAACGTAAACAATGCCGTCTTTCTGTTTGAAACGGACGAGACACTAGCCGAGTCCTCGTTGCTGAAAATGATAGCAAAATTCCTGCAGCTCGAAATAATGCCGGATGACAACATATCTACGAACATCTGTCACGGCTGCTGTGATCATCTGGAGGACTTCAATAACTTCTGGCAGCTGGTAGAGCAAAAACAAGGAACTCTCAAAAAGGAATTCCTTAACGTGGACGTCGATTGTGTCAATCTTAAGTGGACCGGAGGCGTTGATGTGGACGTAAACATTGATGAGTTGCCACTCGTGGCCGTCGCGGGGGATGACGCGGTGGATGAGATGGACGAGAAGCCACTAGATATACACAATCTCAATCTGCTGGGCAGTGTGCTCGATGTGAATGTGGACAGCGTGGAGGTGCTGAGTCCTAGGACGTCCCAGGGCTGTCAGCGCCGAAACTATGGAACGCTAAAAGTGGACGAACTGGATGCGGAACCCAGTCCGGAGACTAGTGCAGACGAGAAACCTTTTATTACCAACGatagcagcgacaacagcgaACGAAACTTTTCGAATGAAGATGATGACTCTGTGCCGCTGGTGCAGCTGCAGCACAAAATGAAACCCAAGCGTAAAATACGCGCCACTCGTGGCAAACAACAGGCATTGACTCTGGCCCAGGAACTGGATCAACTGCTCGGCGAGAGTAGTAACCACACCGGCAATACCAGAGTACGTCGCAAGAAATTAAGCACATTgggagcagctgctgcagcgccCACCGACTCACAGAAGGATGAACTGGAGGCAGCCATGGAGCGACGTCCCAAGGGCTGCTCCAGGGCACAGCTATCAAAACGCTACGAGGAGGCCATTGCCAGCTACATGAATGCGGACTGTGATCTCTGTGATTTCAGTGCCAAATATCTGTCCCAGCTAAAGGTTCACTTCCTGGAGGTGCATCAGCAGGACGCGTATCTCAAGTGCTGCAACAAGATCTTCAATCGACCCTCCAAGCTCATGGACCACATACGCAAACACATCAATCCTAAGCTCTTCACCTGCGAGATCTGCAATAAATCATTAAACTCACAGGATTATCTGgccacacacatagaaacGGTGCACAACAAGGTCGCTCAGGTGGGCAAGGTGCTCAAGTATCCGTGTGACAAGTGTGAGAGGACTTTTAGCAGCGAACGTCGCCTCTCCAATCATGTGCTCAAACACGACACGAATCAGTTGGAGCACAGCTGTCAAATCTGCGAAAAGAGCTTTGCCAATGTGCACCGCTTGAGGCGTCACATTCAATCCATACACGAGGATCTGCATCCACATGTCTGCGATATTTGTGGCAAGAAGTTCAAATTCAAGCCTTCCTTCGAGCGTCATCTGCTGGAGCATCAAGGAGTCGTTGCACCAGCCATGGAGTGTCCCATCTGCGGTGTGTGGCTGAAGAACGAGCACAGTTTGCGTTTGCATCGATTTACCCACGATAGTACCGATACCGTGTGTCCGCACTGCTCCAAGACGTGCAGTTCACGCACCGCACTGCGCGCTCACATCAAATACGCCCACAAATTGACAACGACGCTGCAGTGCACGTACTGTGATAAGAGTTTCAAGCAGCAACGTAATCTGGAGGAGCACATGGCCATACACACGGGATTGCAGCTCTACAACTGTCCCCACTGTCCCAAGGAGTGTCGCTCCCGTTccaatatgtatgtgcacatCAAGCAGCGACATGCGGATGAGTGGCTCAAGGCCAAAATGGCACGATCGCATAATCCACAGTTTAAGCCATTGGCATAG
- Protein Sequence
- MLCRLCLKNINVNNAVFLFETDETLAESSLLKMIAKFLQLEIMPDDNISTNICHGCCDHLEDFNNFWQLVEQKQGTLKKEFLNVDVDCVNLKWTGGVDVDVNIDELPLVAVAGDDAVDEMDEKPLDIHNLNLLGSVLDVNVDSVEVLSPRTSQGCQRRNYGTLKVDELDAEPSPETSADEKPFITNDSSDNSERNFSNEDDDSVPLVQLQHKMKPKRKIRATRGKQQALTLAQELDQLLGESSNHTGNTRVRRKKLSTLGAAAAAPTDSQKDELEAAMERRPKGCSRAQLSKRYEEAIASYMNADCDLCDFSAKYLSQLKVHFLEVHQQDAYLKCCNKIFNRPSKLMDHIRKHINPKLFTCEICNKSLNSQDYLATHIETVHNKVAQVGKVLKYPCDKCERTFSSERRLSNHVLKHDTNQLEHSCQICEKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLLEHQGVVAPAMECPICGVWLKNEHSLRLHRFTHDSTDTVCPHCSKTCSSRTALRAHIKYAHKLTTTLQCTYCDKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLKAKMARSHNPQFKPLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00610817;
- 90% Identity
- iTF_00478897;
- 80% Identity
- -