Basic Information

Insect: Drosophila parthenogenetica
Gene Symbol: -
Assembly: GCA_035047505.1
Location: JAWNPM010000070.1:3901883-3903700[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.8e-06 0.00066 20.2 0.3 2 23 340 362 339 362 0.95

2 9 6.8e-05 0.0051 17.4 3.9 1 20 367 386 367 389 0.93

3 9 4.5e-05 0.0034 17.9 3.4 1 23 395 417 395 417 0.98

4 9 6.1e-07 4.6e-05 23.8 3.1 1 23 423 445 423 445 0.99

5 9 0.00023 0.018 15.7 5.9 1 23 451 473 451 473 0.97

6 9 3.8e-07 2.8e-05 24.5 0.8 1 23 479 501 479 501 0.98

7 9 0.025 1.9 9.3 5.4 1 21 507 527 507 529 0.95

8 9 2.7e-06 0.0002 21.8 2.5 1 23 535 557 535 557 0.98

9 9 1.3e-05 0.001 19.6 3.5 1 23 567 589 567 589 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.8e-06	0.00066	20.2	0.3	2	23	340	362	339	362	0.95
2	9	6.8e-05	0.0051	17.4	3.9	1	20	367	386	367	389	0.93
3	9	4.5e-05	0.0034	17.9	3.4	1	23	395	417	395	417	0.98
4	9	6.1e-07	4.6e-05	23.8	3.1	1	23	423	445	423	445	0.99
5	9	0.00023	0.018	15.7	5.9	1	23	451	473	451	473	0.97
6	9	3.8e-07	2.8e-05	24.5	0.8	1	23	479	501	479	501	0.98
7	9	0.025	1.9	9.3	5.4	1	21	507	527	507	529	0.95
8	9	2.7e-06	0.0002	21.8	2.5	1	23	535	557	535	557	0.98
9	9	1.3e-05	0.001	19.6	3.5	1	23	567	589	567	589	0.99

Sequence Information

Coding Sequence: ATGGATGAAATTTGTCGCTGTTGTGCGATGCCGAGCACCACACTTGAGAATATATTTGGAAATATTGGAAATGGGAGTGAACCGAGCCTTATACTGATTCTGGAATTATGCACAGAGCTTAAGATCAGAGCATCTGATTCGTTGCCTCAAAATATATGTGAATCCTGCATTTCGTCTACCAAGAAGGCCTATGAATTCAAACTCAGATGCGAGCAGAGCGAAAAATACTTTACAAAAATCTTGCGCGACTGTGATGACTTAAAAATGACGTACAAAATGGAGGAAGTTTGTCGCTTTTGCACAGTAAAGTACGCACCGCTAGAGAAAATATTCACCAAGTCTGAGCAGTCGGAGCCTCTACTTATCAATATATTAGAGCATTGTACCAAATGTTCAATAAGAGAGTTTGATTCTTTGCCTCAAAACATATGCGGTCCCTGCACAGCGGCTGCTAAGAATTCCTACGAGTTTAAACTCAAGTGCCAGCAGagtgaaaaatatttcacCTCATGGGACTATGTCATTACAGAATACTCgtcagaagaagaagaacaattTGAGGAGATTGCCGGAAATAAAACTGCAGCAGAACCAGATGACTATGACATTGTGAAGGAAGAATTTAAGGAGAGTGCCGGAATCGCAACTACAGCAGAGCCAGATGACTGTGACAATGTGATACAAGAAAAATTTGAGCAGAGTGATAAACACGCAACTACAACAGAACCAGATGACTATGACATTGTGAAGGAAGAATTTAAGGAGAGTGCCGGAATACCAACTACCGCAGAACCAGATGACTATGACATTGTGATGGAAGAAGACTTTGTGGAGAGTGCCGGAAACACAACTACATCAGAACCAGATGACTATGACATTGTGAAGGAAGAAGAATTTGAATTGAGTGACGGAAACGCAAGTACAACAGAACGAGATGACTACTCCGAAAGTAGTGATGGCAGCACAGGCAACGAATCAGCTGAGTCAAGCCCAAATCAGCAGTCTAATTCAAAAATCAAGTGCTCCAGCTGTCCGAAAACCTTCGCCAGGGAATCGTTACTGGTTCGACACATGAGTTATGCCCATAACCCCAAAACTCATATATGTGCCActtgcaacaaagtttttaaaacagaATCGTATCTAAAAAGGCACATGATTTGCCATTCGGCAGAACATCCCTTCAAGTGTGAGCACTGCCCGATGACTTTTCGAACCCAATTTGTACTGCAATCCCACCTGACCACACACTCCGATGATCACCCCTTCAAATGTGAGCGCTGTGGGAAGGGGTTTAGGACAAATAACCAGTTAAGATCGCACAAGAGGACTCATTCCGACCAACGGTCCCACCAATGTGAAGACTGCCTGAAGATGTTTAGGACCAGATTCCATTTAAGGCAACACTTATTTGTGCACACCCCGGAACTGCCTTTCAAGTGTGAGCAGTGCCCCAAAGGTTTCAAATCCAGGTACAATTTGAGAATCCATCAAATAGTACACTCCAAAGAAGGTCAATTTCAATGCGATGAGTGCCCTGTGATTTGTAAGACGAAAGCCAAATTGATACATCACCAGAAGTGTCACTCCGATGTGCGGCCTCACAAGTGTGAGCAATGCGGGAGAGCgttcaaatcaaaattcgTTTTAGAAAAGCACATGAAGGTGCACATGAGTTCCTACACGGAGGAGCGTCCCTTTAAATGTGATCAATGCTCAAAGACGTTCAAATCCGAGCTCATGCTGAAAAGGCACACTCGTTCTCATTCCGAGGAACTGCTCGGTCCCATTTCAACACTTCTCGATATAGTTTACTAA
Protein Sequence: MDEICRCCAMPSTTLENIFGNIGNGSEPSLILILELCTELKIRASDSLPQNICESCISSTKKAYEFKLRCEQSEKYFTKILRDCDDLKMTYKMEEVCRFCTVKYAPLEKIFTKSEQSEPLLINILEHCTKCSIREFDSLPQNICGPCTAAAKNSYEFKLKCQQSEKYFTSWDYVITEYSSEEEEQFEEIAGNKTAAEPDDYDIVKEEFKESAGIATTAEPDDCDNVIQEKFEQSDKHATTTEPDDYDIVKEEFKESAGIPTTAEPDDYDIVMEEDFVESAGNTTTSEPDDYDIVKEEEFELSDGNASTTERDDYSESSDGSTGNESAESSPNQQSNSKIKCSSCPKTFARESLLVRHMSYAHNPKTHICATCNKVFKTESYLKRHMICHSAEHPFKCEHCPMTFRTQFVLQSHLTTHSDDHPFKCERCGKGFRTNNQLRSHKRTHSDQRSHQCEDCLKMFRTRFHLRQHLFVHTPELPFKCEQCPKGFKSRYNLRIHQIVHSKEGQFQCDECPVICKTKAKLIHHQKCHSDVRPHKCEQCGRAFKSKFVLEKHMKVHMSSYTEERPFKCDQCSKTFKSELMLKRHTRSHSEELLGPISTLLDIVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00569172;
90% Identity: -
80% Identity: -