Dpar009813.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- -
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000174.1:5636849-5638219[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 1.3e+02 2.9 0.1 6 23 22 37 21 40 0.91 2 10 3.6e-06 0.0042 17.2 1.7 12 44 179 208 174 208 0.88 3 10 3.5e-06 0.0041 17.3 0.6 12 43 223 251 216 252 0.91 4 10 2.1 2.5e+03 -1.2 0.1 18 43 260 282 256 283 0.64 5 10 0.19 2.2e+02 2.1 1.3 17 37 285 302 279 309 0.78 6 10 3.6 4.3e+03 -2.0 1.1 5 25 302 323 298 333 0.61 7 10 5.5 6.5e+03 -2.6 3.5 12 41 338 364 327 365 0.68 8 10 1.1 1.3e+03 -0.3 0.1 19 36 373 387 371 395 0.77 9 10 0.0032 3.8 7.8 0.7 17 38 399 417 388 418 0.81 10 10 0.015 17 5.6 0.9 14 40 424 447 415 450 0.70
Sequence Information
- Coding Sequence
- ATGATTAAAGCACTCAAACCGAACACATTCGCTGGCAttccaaatgccaaatgcgGCGAGGTGTATTTCCAGAGCTTAAGCAGTTATCGCATTGATTGCGCCTTCTGTGACATGAAGAGCTTCGTGTTTGCCGACTTTCTGCTGCACATACAGAACGAGCACTTTGAGAACGAACTACTCAAAACAGAGGCTGTGCAGCCAAAGCAGGAGCAACCAGACGGTTCACCACCACAAGTTCACAATCCATTTTCATGGTACGAAGTGACCAACAACGATGagaatgacgatgatgatgctgataaTGATGTTGAGAgtgaaaatgaatttattgctGAACCCAAACATACTAAAAACAGTATCAATGAAGCTGAGAGTGAGGAGCAGACTGAAGATCCTGTCGATGTGTCCAGCAGTGCCATAACCATAATGAAATGGAGCCACAGCGGCCGGGAACAAGTGCGTCACACGCGTGCTCTAAAGGTCGATTACAATGAGGATTCTGATTCGGAAACAGGCAGAGATAAAGTGTCTAAAGCCAAAAAAGAGCAGCTGGTCTGCATACACTGTGCGAAAACCTATCAAAGTATCAAAATGCTAGAGCGACACATGGAGCGACAGCACAAATATATAGATTCCGATGTCGAACTGGATTTGGTGATGGCTAACAAGCGCTCCAATGTCTACAAATGTGAGCATTGCGATAAAGTCTATCAGGGCAAATATACACTGCGACAACATATAAAACGGGATCACGATATCAATGTGAGTGAAACGTTCATCTGCCTGGAGTGCAATGCCCAATTGCCGCGACTACGTCTGCTCGACGAGCATATGGTGCAGGCGCATGGCGGTGCACCATGTGTGATCTGCGGCCGTCGCTACAAGACACGCCACGAACTCAAGCGTCACCAGATAAAGCACACCAGCGAACGTAATGTGATCTGTAGTCATGACGGCTGCGAGAAGCGTTTCTTAACCACACGCCATATGCGCAATCACAGCAAGGTCCACTCGGAGCAAAAGAATTTCGTCTGCGAGAGTTGTGGCTACAGTTGTCGGAACAAGGAGACGCTACGCGTCCATTTGAGGAGTCACACGGGTGAACGTCCATTTGGTTGCAAGGTGTGTGATAAACGTTTCCCTTCGCACTCCGGCGTGCGGGAGCACATGGCCATGCATTCGACGGAACGTCCATATGTCTGCAATGTCTGCGGTGCCACCTTCTCACGCCAGAAGGGACTCTATCACCACAAGTTTCTGCATGCAGCCACCAAGCAATTCGTTTGCAAATTGTGTGGAAATGCCTATGCACAGGCCGCGGGTTTAGCTGGACACATGCGCAAGCATCGCAACGAAGAACTAAATGTTTAG
- Protein Sequence
- MIKALKPNTFAGIPNAKCGEVYFQSLSSYRIDCAFCDMKSFVFADFLLHIQNEHFENELLKTEAVQPKQEQPDGSPPQVHNPFSWYEVTNNDENDDDDADNDVESENEFIAEPKHTKNSINEAESEEQTEDPVDVSSSAITIMKWSHSGREQVRHTRALKVDYNEDSDSETGRDKVSKAKKEQLVCIHCAKTYQSIKMLERHMERQHKYIDSDVELDLVMANKRSNVYKCEHCDKVYQGKYTLRQHIKRDHDINVSETFICLECNAQLPRLRLLDEHMVQAHGGAPCVICGRRYKTRHELKRHQIKHTSERNVICSHDGCEKRFLTTRHMRNHSKVHSEQKNFVCESCGYSCRNKETLRVHLRSHTGERPFGCKVCDKRFPSHSGVREHMAMHSTERPYVCNVCGATFSRQKGLYHHKFLHAATKQFVCKLCGNAYAQAAGLAGHMRKHRNEELNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471085;
- 90% Identity
- iTF_00471085;
- 80% Identity
- iTF_00569194;