Basic Information

Insect: Drosophila paranaensis
Gene Symbol: PRDM1
Assembly: GCA_035047545.1
Location: JAWNPL010000145.1:13042306-13046731[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.1e-05 0.0021 18.4 2.5 1 23 886 908 886 908 0.99

2 5 9.2e-06 0.00062 20.1 5.1 1 23 914 936 914 936 0.98

3 5 1.9e-06 0.00013 22.2 4.3 1 23 942 964 942 964 0.98

4 5 0.00064 0.043 14.3 2.4 1 23 970 992 970 992 0.97

5 5 0.00011 0.0074 16.7 0.1 1 22 998 1019 998 1019 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.1e-05	0.0021	18.4	2.5	1	23	886	908	886	908	0.99
2	5	9.2e-06	0.00062	20.1	5.1	1	23	914	936	914	936	0.98
3	5	1.9e-06	0.00013	22.2	4.3	1	23	942	964	942	964	0.98
4	5	0.00064	0.043	14.3	2.4	1	23	970	992	970	992	0.97
5	5	0.00011	0.0074	16.7	0.1	1	22	998	1019	998	1019	0.96

Sequence Information

Coding Sequence: ATGCATGGACATAatcatcaccagcagcagcagcagcagcagcaacagcagctgccgcagccgccgcagcagccgcaacaaatGTCCGCCACAATGAAGCTGACTGGCAACCCAcatccacacccacacccacacccacagcagcagcaaacacacatagccatacagcaacagcatccacATCATCCACAGCATCCACAACATCCACAACATCCGCATCATCACGCCAAGCTGCTGCGACGCTcgcgcagtcgcagtcgcagccccACGCCGGACGGCACGCAGGACTACGATGTGACGCGCATGCGCGAGGAGGACTTCGAGCGGCTGGCCGTCTACCTGGTGCCCGATGTGCAAGCGGAGCGCGGTCTGCCCAATCGAGCGGACAAGACGCTGCCGCGCAGCCTCACGCTCAAGTCCTCCATGGTCTACTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCAGCGGCGTCATTCCCCGTGGCACACGCTTTGGCCCTTTCGAAGGCATTCCAACCTCTAACTATCCGAACGATAAGAACAAGGCGCGCTATTTCTGGCGGGTGCAGGGAACACGCCACATAACCTACGGGAATATTAAGATCTTCAAGGACgatgattattattatctgGATGGCTCGGATCGCTCGCAGTCGAACTGGATGCGCTACGTGGCGTCGGCATACAGCTTGTCTGTGATGAATCTGGTCGCGTGCCAGCACCAGGAGAACATCTACTTCTACACCACCCGCGACATACTGCCCAACGAGGAGCTGATGGTCTGGTACTGCAAGGACTTTGCCAGCCGCCTGGGCTACGACGTGGATCCCGAGCGCACCATATTCGGCGCCTGCAAGCAGGACGTAGACgtggaggaggacgaggacgacgatCTGCCGCACAAGAAGCCGCATTACGCAATGGCCGCGCCCGAGATACCCGCCGAGGTGGCTGTCAGCCACATCACCTACGTGATGGGCCTGCATTTGCCGGGTGCGCCGCCAGCGGCCGCTGCCCCACCTCCCGCCGCCCAGTGCTGTCGTCGCGCCAGTCCGCCAGCCCATgtcagcaccaccaccagcaccaccaccagcaacaacaacaacaacggcagcagcaacaactcagGCTCGAGCTCGCTGCATCCGCACATACAGCACAGCCGGCATGCGTCTGTTATCATTGGACAGGATCGTTCGCCGCTGAACAGCAGCTGCGACAAGGAGACGGTGGGTTCGCCGCTGTGCGTCAAGGATGCGCATTATGAGCATCAGTTGACGCCGCAGGACGGCAGCGTGCGCTCGGTGCGCTCCGACGAGGGCTACCACAGCAACGAGTGCCAGGAGGATGGCCTGACGCCCCCGGAGGACTCCAGcgacagcgagagcgagcaCAACTACGTGCTGGACTGCTCCAAGAAGGCCATTGCGCCCAAGGAGACGGTCATTGCGCAGGCGCAGAAGTCCAGCAGCGTGACGCCGCCAGCCACCACGCCCACCGCCGCCACGCCCAGCTGTGAGGCGGACAAGAACGAGTACCGCAAGTTCAAGGTGAAGATGCCGCTGAAGTACGAGTTCAAGAACAAGAGCTGCGTCAAGACGGAGCCGCTCAAGGACGTGGACGAGCACCTGCCCATAGCTGGCGTCGGcctggaggaggaggagctgcacGAGCTCCACGCAGCGGCGGCAGTGCATTCCGAGGACTCCCTCTGCCCGCCCAGCACGACCACCACGCTTGGCGAGGAGCAGCACCTGCAGCACCTGGAGCCGACCAACGCCCAGCCCGCCTCTTCGACGGTCATTGTGCTGGAGCACAACTCGGGCGGCCAGACGCGCACCATTGTGCCGCTGAGCAAGCCCTACTACGAGGCCGATCCGCCTGGCGAGCGCTACGTGCGCTTCACGCAGCCCAGCTCCAGCATACTGGAGACGATCCTGACCAGCCAGCACCGCCTGGAGGCAGCAGCCGCGGCAGCCAACGCCTGCCGGCAGGCGAATGCCGCCACGCCGCCGCCCACATCGCCCACGGAGATGGCCTACAGCTACAAGAAGTCCCAGCGCTACGGCAACGCAGTTAGTCCCGACTCCAGCTCTAATCTGGGTCAGCCCCAGGAGCTGCCAGGTGGACACGTTGTGAGCGAGCAGGAGCTGGTGCTGAGCCGCGGTGCGCTGATCAAGGGCGAGTGCTCGCCGCCACCTGCCGGCTCGCACCTGCACCACAATGTCATCTACTCGCCCTCGAGGACGCACCACGCCGCCTACGAGCCGGGCAGCCACTCGCCCAACTACGCAGGCTATGCGGGCTATCCGGGCGCGCAGTCCCTGCACGCAGCCACCTCCACGTTCCACTCGCCGCCGCACAGCTCGCACTCGCCGTTCGATCGGCAGTCGAATGCGTCCAGTGGCGGAGGCTCTGCCTCCAACTTGCATCTGCTGCAGAGCAGCACTCAGATGCTGAACCATCCGCTGATGCAGCCGCTGACGCCGCTGCAGCGGCTCTCCCCGCTGCGCATCTCACCGCCCAGCAGCCTCAGCCCCGACGGCAACTCGTGTCCGCGCAGCGGCAGCCCGTTGAGCCCCAACTCGCTGGCCTCGCGCGGCTACCGCTCGCTGCCGTATCCGCTGAAGAAGAAGGATGGGAAGATGCACTACGAGTGCAATGTCTGCTGCAAGACCTTCGGCCAGCTGAGCAACCTCAAGGTGCACCTGCGCACGCACTCCGGCGAGCGGCCGTTCAAATGCAACGTCTGCACCAAGAGCTTCACCCAGCTGGCGCACCTGCAGAAGCACCACCTGGTGCACACGGGCGAGAAGCCGCACCAGTGCGACATCTGCAAGAAGCGCTTCTCCAGCACCTCCAATCTGAAGACCCATCTGCGCCTGCACAGCGGCCAGAAGCCCTACGCCTGCGATCTCTGTCCCCAAAAGTTCACCCAGTTCGTCCACCTGAAGCTGCACAAGCGCCTGCACACCAACGACCGGCCGTACGTGTGCCAGGGCTGCGACAAGAAGTACATCAGCGCCTCCGGCCTGCGCACGCACTGGAAGACCACCAGCTGCAAGCCCAACAACCTGGAGGAGGAGCTGGCCatggcggcagcagccacatcCGAGTGCTTGGACAAAGATTTGCCCGAGCCGGACTCTCGTGAGGCCTacgagcaactgcagcagcacatgCATCCGGTGCACCCGAGCCTGCGTCACTTGACTGGCGCCCAGTCGCCGCCGCGTCTCATTCCATTGGGCAGCAACGGACAGCCCCACATgcacatgcagcagctgcaaggaCACCAGCCGCATCAGCCCAGCAATGCGCCGCCGGGTCATCTGATGCTGCCGCAGCATTCGCCGCACAGCGGGCCGCCCATGCTGCTGACGACGGCCAACCAGCTGCCGCCACCCACAGCGCCTCaccacatgcagcagcagccgccgcaggcCTCGCCCAACCGACAGCCGCCcacacaccagcagcagcagcagcaacagcaacagcagcagcagcatctgggAGCGGCGCATCATCTGGCGCAGCACTCGCCCAAGTCGCTGAAGCCGCTGTCCGATGCGGGCTACTTGCACGGAGCGCATGTCCAGGCGCAGGAGAACCGACCCTCGGTCATCGAGTCGTCCAGCCAGCCCATGATCATCAAGTGTacgtag
Protein Sequence: MHGHNHHQQQQQQQQQQLPQPPQQPQQMSATMKLTGNPHPHPHPHPQQQQTHIAIQQQHPHHPQHPQHPQHPHHHAKLLRRSRSRSRSPTPDGTQDYDVTRMREEDFERLAVYLVPDVQAERGLPNRADKTLPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNKARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYFYTTRDILPNEELMVWYCKDFASRLGYDVDPERTIFGACKQDVDVEEDEDDDLPHKKPHYAMAAPEIPAEVAVSHITYVMGLHLPGAPPAAAAPPPAAQCCRRASPPAHVSTTTSTTTSNNNNNGSSNNSGSSSLHPHIQHSRHASVIIGQDRSPLNSSCDKETVGSPLCVKDAHYEHQLTPQDGSVRSVRSDEGYHSNECQEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKSSSVTPPATTPTAATPSCEADKNEYRKFKVKMPLKYEFKNKSCVKTEPLKDVDEHLPIAGVGLEEEELHELHAAAAVHSEDSLCPPSTTTTLGEEQHLQHLEPTNAQPASSTVIVLEHNSGGQTRTIVPLSKPYYEADPPGERYVRFTQPSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQPQELPGGHVVSEQELVLSRGALIKGECSPPPAGSHLHHNVIYSPSRTHHAAYEPGSHSPNYAGYAGYPGAQSLHAATSTFHSPPHSSHSPFDRQSNASSGGGSASNLHLLQSSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAYEQLQQHMHPVHPSLRHLTGAQSPPRLIPLGSNGQPHMHMQQLQGHQPHQPSNAPPGHLMLPQHSPHSGPPMLLTTANQLPPPTAPHHMQQQPPQASPNRQPPTHQQQQQQQQQQQQHLGAAHHLAQHSPKSLKPLSDAGYLHGAHVQAQENRPSVIESSSQPMIIKCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00610151;
90% Identity: iTF_00476868;
80% Identity: -