Dpar002356.1
Basic Information
- Insect
- Drosophila paranaensis
- Gene Symbol
- L
- Assembly
- GCA_035047545.1
- Location
- JAWNPL010000026.1:13018863-13028817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1e-05 0.00071 19.9 2.9 1 23 168 190 168 190 0.98 2 17 0.36 24 5.6 6.2 1 23 196 218 196 218 0.97 3 17 1.7e-07 1.2e-05 25.5 3.2 1 23 224 246 224 246 0.99 4 17 1.3e-05 0.00086 19.6 0.4 1 23 252 274 252 274 0.99 5 17 0.014 0.96 10.1 0.2 2 23 353 377 352 377 0.93 6 17 0.00095 0.064 13.8 0.3 3 23 402 423 402 423 0.98 7 17 0.063 4.3 8.0 0.7 1 23 482 504 482 504 0.97 8 17 0.004 0.27 11.8 0.1 2 23 512 533 511 533 0.91 9 17 0.017 1.1 9.8 1.2 3 23 543 566 541 566 0.85 10 17 3.4 2.3e+02 2.6 1.0 2 23 602 624 601 624 0.95 11 17 0.0026 0.18 12.4 1.1 1 23 672 695 672 695 0.97 12 17 0.0066 0.45 11.1 1.6 2 23 871 893 870 893 0.96 13 17 0.12 8 7.2 0.1 1 23 899 921 899 921 0.92 14 17 0.28 19 6.0 0.4 2 23 929 950 928 950 0.95 15 17 0.32 22 5.8 1.3 1 23 1049 1071 1049 1071 0.94 16 17 0.01 0.7 10.5 0.0 1 23 1081 1103 1081 1103 0.96 17 17 0.0084 0.57 10.8 1.2 1 23 1108 1130 1108 1130 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTCTAAAGATGCTGTATCGCGGTCCCAGTTCGCGTTTAGAGAACTTGATTGAAAAGATTCAAGCGACCAAGGAGATAACTAATAACGATATGTACAGCACGCACACTTCGTCCAGCTACTCGCCCAGCATCTCGGACGGCACGCTGACGCCCAactcgcagctgcagcagccgcagctccagcagcagcagcagcagcagcagcagcaggcgccacAGCCTGGCGAGGAGGCCGGCGAGGAGGGCAAGGCGAATGGCGATGCTGTGCAGCAGacggagctggagcaggagctgagCAAGCCGAAGCGACCGGCACACctgcatcatcatcaccatcatcattatcatcaccAGCAGGCGCTGAAAATAGCGAACAAATTGCGCAAAATCAATAAGGATGCGAAGCTGGCTGcaggacaaggacaaggacatGGCACAGCCGCCAAGTTTGATAAGTTGACAGGGGAGGGGATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCATCACGTCCAGAGCCACGCCGAACACTTGCCTTTCAAGTGCGAATACTGCGCAAAGCTGTTCAAGCACAAACGCTCGCGAGATCGCCACAAGAAGCTGCATACAAATGAGCGGAACTACAAGTGTCCGCATTGCGAGGCTGCTTTCTCCAGAAGCGATCATCTGAAGATTCACATGAAGACGCACGACATCCAGAAGCCCTTCCAGTGCAGCATGTGCAACCGGGGCTACAACACGGCCGCCGCGCTGACCTCGCACATGCAGAAGCACAAGAAGAACGCCGCCATCCTGGCCGCTGGGGGCAATCCCAATGCGCTCAACTACAGTCCGCGCTCCACGGGCTCCGCCTCGATCTCGAGCAATGGGAGCCTGCACAAGCGTCGCTATGCGCTGGCGCTCGCCTCCGACAGCAGTCCCAGCCGCCTGGAGTTTCCCAAGCGGGCGCGTGGCCAGCtggcggccacgcccacggccACAGCGGTAGCGACGCCCAcgccgctgctgcgctgcagctACTGCCCCAAGGCGACGGAGTTCAGCAGCCTCGAGCAGCTCAACGCGCACCTCCAGAGCACccacgagcagcagccgcagccccaCCCGCCGCAGGCCAAGGACTCGGATGGTCAGACGAATGGATTCCAGCTGGGCTGCGAGTACTGCACGATGAAGTTCGTCAACATCGCGGCGCTGTTCCAGCACATGAGGGTGACCCACTTGGATCGGCTGAGCAGTCCCAACGCCTACTACGAGCAGTCGAAGCTCAAGCCGGAGTCGGAGAAGCCCGAGCAGGAGCTGCCCACGGACCTGAGCAGCAACAAGCGCCGCCCACTCGCCTCGCCcacacagccgcagccgcaggcGCAGCCACAGTCGGCTCCGCCGGGCATCTTCTTCTGCAACCAGTGCAACGCCGGGCTGCCGGACTTCGAGAGCTTCCGGAACCATCTGAAGAGCCACATCGCCGAGGGCATGCAGCTGAGCTGTCCGCACTGCGGGCTGAGTCTGCCCGAGCAGAGCGAGTTCGAGCGCCATGTGGTCGCCCACTTCCTGATCAGCAGCTCGGagttcagctgctgcagcgccagctgcggcAAGTCGTACGCGAAGGCGGAGGAGCTGCACCAGCATCTGCTGGCCGAGCACGTCCAGACCTTGCTGAAGTGCGTCCTCTGCTCGGAGCTGTGCGAGAACCGGATGGCCATGCAGCTCCACCTGGCCTGCGCGCACAGCCAGGAGTCGAagctgctgcgctgcagcgCCTGCCTGGAGCTCTTCCGCACCGACGCCGACTTCCATGTGCACGTCAAGACGCGCCACCAGCTGGCCAATaccgtgggcgtgggcgtgggcgtgggcaatCCACCCGCTCCGGCCAATCCGCTCCAGTGCATGTTCTGCCGCGCCGTCTGCGCCTCGGAGCTGGAGATGCACTTCCATCTGGCGGCGCATGCGCGCCAGTTCCGGTGCCCCAGCTGCCCGGAGACCTTCCACGTGGAGTTCCTGCTGGACAGGCACATGCAGAGCCAGCACGGCGGCATCAAGGACAAGGAGTCGCCCGTCGCCGGCGCCGGCGCCATGGGCAGCCTCTATGTCAACGCCCTGCTGCCCCCgctcgccgccgctgctgcagccgctgctgccgccaacaacaacaacaacaacaacaacaacaacagcaacctgCACATAGACTACAACGTGGCCTTCAAGGGTCTCTTCGGAGGAGGGGGTGGCGGTAACCCGCCGAACAAGTTCTACCCAGCCTGCAGCCCGCTGCAGGTGGACACCAAGCAGGGTCCGCATCCGGCGCTGATGTACGGCCTGAGCCAGCGCTACCTGATGGAGATGTACGCGGCCAAGGCCAGCTCCCCGGCGAATGCCAGCACCACCGAGCTGACCACGCCCACGTCCGCcaacggcagtggcagcggcagtggcagcggcagcgggaACAGCTTCAGCTGCGGCATGTGCGAGCGCCAGGATCTGCGCAGCGAGGCGGAGCTCCACTCCCACCGGAAGCTCGCCCACAACCTGAAGACGGGCGTCAGTCTGAGGTGCGCCTACTGCTCCGGGAACTACAAGAGCCGGgccgagctggagcagcacaTGAAGAGCTGCCACAACTCGAGCGGGAAGCACAAGTGCCTCATCTGCGACGAGATCTTCCCCTCGCCGGCCATCCTGGCCGAGCACAAGCTGCAGCACTCGAAGGTGGGCCAGTCCGGCAAGTGCGCCCACTgcggccagcagctggagcacgTGGCCGCCTTCCGCGCCCACCTGGCCGAGCACGGCAACGACGGCAACCTGCCCCTGGCCTGCATCTGCTGCCGCCAGACGCTCCACTCGGAGTTCGAGCTGAGCCTGCACGCCAAGTTCCACACCAAGTCGCCCGGCTGCAACAGCCTGCAGGAGCCCGTCTGCGCCCTCTGCCTGGAGCCCCTGCCGGGCGCTGGAGACACCGCCAAGCTCTGCGAGAAGTGCTGCCGCAAGCACAATCTGAACGGCAAGCGCaaggagcagccgcagccagcgGCCACAGCGGCCACAGCGGCTACAGGTGCTCCAGCTGTGGCCTATCTGGAGCATCGCTGCAATCTGTGCAAGATGATCCTGCCCCACGCCCAGAAGCTGCAGGAGCACCTCGTCGAGCACACCTTCGCGGGCACCGAGCAGCGCGGCTACAACTGCTACATCTGCTCGGCGGTGTTCACGGCTCCCGCCGGGCTGCTCACCCACATGGCGGAGCACGGGACGCGCCCGTACGACTGCAACCTGTGCCCGGACAAGTTCTACTTCCGCGCCGAGCTGGAGCACcatcagcgcgcgcacgagCTCCGCCCGCCGACTGCGGCGCGGCCCAAGCAGGAGACGCACAGCTCCACGGCCAGCTCTCCGCTGACGCTCAGTCCCAGCCATGTCAAGCAGGAGCTCTACGAGTCGGAGGCAGCGACCTCGCCCAACCCCACTGAGCAGCCCACGCagccggaggaggaggagtacaTCGAGGTGGAGCAAGTGCCACAAGAGACGCCACGCACTGGCGAGCTGCTGAGCACCGagcgctccagcagcagcgcctaa
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSQLQQPQLQQQQQQQQQQAPQPGEEAGEEGKANGDAVQQTELEQELSKPKRPAHLHHHHHHHYHHQQALKIANKLRKINKDAKLAAGQGQGHGTAAKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARGQLAATPTATAVATPTPLLRCSYCPKATEFSSLEQLNAHLQSTHEQQPQPHPPQAKDSDGQTNGFQLGCEYCTMKFVNIAALFQHMRVTHLDRLSSPNAYYEQSKLKPESEKPEQELPTDLSSNKRRPLASPTQPQPQAQPQSAPPGIFFCNQCNAGLPDFESFRNHLKSHIAEGMQLSCPHCGLSLPEQSEFERHVVAHFLISSSEFSCCSASCGKSYAKAEELHQHLLAEHVQTLLKCVLCSELCENRMAMQLHLACAHSQESKLLRCSACLELFRTDADFHVHVKTRHQLANTVGVGVGVGNPPAPANPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGIKDKESPVAGAGAMGSLYVNALLPPLAAAAAAAAAANNNNNNNNNNSNLHIDYNVAFKGLFGGGGGGNPPNKFYPACSPLQVDTKQGPHPALMYGLSQRYLMEMYAAKASSPANASTTELTTPTSANGSGSGSGSGSGNSFSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLAEHGNDGNLPLACICCRQTLHSEFELSLHAKFHTKSPGCNSLQEPVCALCLEPLPGAGDTAKLCEKCCRKHNLNGKRKEQPQPAATAATAATGAPAVAYLEHRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGYNCYICSAVFTAPAGLLTHMAEHGTRPYDCNLCPDKFYFRAELEHHQRAHELRPPTAARPKQETHSSTASSPLTLSPSHVKQELYESEAATSPNPTEQPTQPEEEEYIEVEQVPQETPRTGELLSTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -