Basic Information

Insect: Drosophila paranaensis
Gene Symbol: sob
Assembly: GCA_035047545.1
Location: JAWNPL010000029.1:11842-14488[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-05 0.0015 18.9 2.6 1 23 445 467 445 467 0.98

2 5 1.8e-07 1.2e-05 25.5 1.8 1 23 473 495 473 495 0.97

3 5 3.9e-05 0.0026 18.1 1.1 1 23 501 523 501 523 0.96

4 5 1.2e-07 8.2e-06 26.0 3.3 1 23 529 551 529 551 0.98

5 5 2e-05 0.0014 19.0 3.0 1 23 557 579 557 579 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-05	0.0015	18.9	2.6	1	23	445	467	445	467	0.98
2	5	1.8e-07	1.2e-05	25.5	1.8	1	23	473	495	473	495	0.97
3	5	3.9e-05	0.0026	18.1	1.1	1	23	501	523	501	523	0.96
4	5	1.2e-07	8.2e-06	26.0	3.3	1	23	529	551	529	551	0.98
5	5	2e-05	0.0014	19.0	3.0	1	23	557	579	557	579	0.97

Sequence Information

Coding Sequence: ATGGATGCAGCGAAGCAATtgactgccgctgctgcagctggcaagcacgataacaacaacagcaacaccaccaccaacaacaacaacaacaacaacaacaacaacgacaacgacaacaacactATGCAAacagtgcaacaacaacagcaagccaatacaacagcagcagcaactgtatCAGACGCCTGCAATACATCAGAAGCGCtagaaacaacagcagcaacagcaacaattgcagttagtaaaacaaacaacaacaacaacaacaacaagcaaacagctatgacaacaacaacagcaaacattgagcagcagctcaaaaAGACAGAAGTTCAatcaacaccaacaacagcaacaggcaaaccagcaacagcaacatcaacatcaacagcagcaacagcaggcgccacaacagcaacagttgctggtGCCGGCAAGTCGAGTGCAGCCGCAATGGCCGCTGCCacggccacagcagcagcggccaccAATGacttggcagcagctgctgctgtcgtcctGTCCCTCCAGGGCACCATGGTCAGCAGCCTGCAGCAGGCGGCATTGCTGCCGGCcaactcagcagcagcagcagcgctcaaTCTGCAAGCGCTCGAATCCTATTTGGCACTGCAGCGTCTCACTGGCAAATCGGATGTGTTTCgatttagcagcagcagcaacagcaacagcaatggcagcggcaacagcagcaacaacaacagcgatgCTGAGCAACATGCGACATTGCCAACAATCATAGATATTTCCAGCATTGAGCTCAAGTCCAGTTGCTCCTCCAGCGCCTCAAGCGTCTCGGCAGCTGTGGCCAGTtcgcccagcagcaacaacaacaacagcaacaacagctccggcaacaatagcagcaatagtaacagcagcagcaacaatacaacaacaacaacaacaacaacaacagctccaTGCATTCCGCCGCTGCCCTCAATTAGCACCGTGAGCGCTGCtgtggccgctgctgctgccgctgccgccgctgcagccaATCAGCAAGCGGCTTTGGACTGTGCCACAGCCGCCGAGCTGGCGGCTGAGTGCGATTTGCCGCTGCTCGACGGCGAGGATGCGTTGTCCTTTGAGGCTGGTGACCTGGACAGCAGCTACGGCAGCTTCATCTTCAATCCGAGCAGCTTCGGCGCCGCCGAGACGGACACTTCGCTGCACTCGCTGCAGGCCACCATGTACCAGGACAAGCTGAGCGTCATAGCGGCCAGCGCTGGCAGCGGAGCTGAGGATGCGGCCAACAGCTCAacggcagccgccgccgccgctgcccagcGCTCCAAGAAGCAGTTCATCTGCAAGTTCTGCAACCGCCAGTTCACCAAGTCCTACAATCTGCTCATCCACGAACGCACCCACACGGACGAGCGGCCCTACTCGTGTGACATCTGCGGCAAGGCCTTCAGGCGACAGGATCACCTGAGAGATCACAGATACATTCACTCCAAGGAGAAGCCCTTCAAGTGCGCCGAGTGCGGCAAGGGCTTCTGCCAGTCGCGCACCCTGGCCGTGCACAAGATCCTGCACATGGAGGAGTCGCCGCACAAGTGTCCCGTGTGCAATCGCTCCTTCAACCAGCGCTCGAACCTGAAGACCCATCTGCTCACCCACACGGACATCAAGCCCTACAATTGTGCCTCCTGCGGCAAGGTGTTTCGGCGCAACTGTGATCTGCGGCGCCACAGCCTCACGCACAATCTGTCCGCCACGGGCGGCATGGCCGGTGGCTTGGGCGATCTattcggcagcagcagcaatggctcCAGCTCCGACCTGGGTCTGTCTATGGTGCTGCCCAGCTCAACGGGCGCCGGTTCAACGGGCTCAGCCACAAGCCGCGACCTGGTTGCCGTCAGCGATTAG
Protein Sequence: MDAAKQLTAAAAAGKHDNNNSNTTTNNNNNNNNNNDNDNNTMQTVQQQQQANTTAAATVSDACNTSEALETTAATATIAVSKTNNNNNNNKQTAMTTTTANIEQQLKKTEVQSTPTTATGKPATATSTSTAATAGATTATVAGAGKSSAAAMAAATATAAAATNDLAAAAAVVLSLQGTMVSSLQQAALLPANSAAAAALNLQALESYLALQRLTGKSDVFRFSSSSNSNSNGSGNSSNNNSDAEQHATLPTIIDISSIELKSSCSSSASSVSAAVASSPSSNNNNSNNSSGNNSSNSNSSSNNTTTTTTTTTAPCIPPLPSISTVSAAVAAAAAAAAAAANQQAALDCATAAELAAECDLPLLDGEDALSFEAGDLDSSYGSFIFNPSSFGAAETDTSLHSLQATMYQDKLSVIAASAGSGAEDAANSSTAAAAAAAQRSKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILHMEESPHKCPVCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSATGGMAGGLGDLFGSSSNGSSSDLGLSMVLPSSTGAGSTGSATSRDLVAVSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00559699; iTF_00573523;
90% Identity: -
80% Identity: -