Basic Information

Insect: Drosophila paramelanica
Gene Symbol: -
Assembly: GCA_035043915.1
Location: JAWNMO010000617.1:4177299-4179359[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.4e-06 0.00046 20.4 1.6 2 23 95 116 94 116 0.98

2 16 0.00037 0.023 15.0 1.4 1 23 122 144 122 144 0.96

3 16 0.21 13 6.4 6.3 1 23 150 172 150 172 0.98

4 16 2.1 1.3e+02 3.2 1.4 1 11 178 188 178 191 0.86

5 16 0.0027 0.17 12.3 0.2 2 23 196 217 195 217 0.97

6 16 1.3e-05 0.00081 19.6 4.3 1 23 223 245 223 245 0.98

7 16 0.0031 0.19 12.2 3.7 1 20 251 270 251 273 0.94

8 16 0.003 0.19 12.2 0.4 1 20 385 404 385 405 0.93

9 16 3.1e-07 1.9e-05 24.7 1.3 1 23 419 441 419 441 0.98

10 16 2e-07 1.2e-05 25.3 2.2 1 23 447 469 447 469 0.99

11 16 5.3e-05 0.0033 17.7 1.5 1 23 475 497 475 497 0.99

12 16 2.2e-07 1.4e-05 25.2 2.5 1 23 507 529 507 529 0.98

13 16 7.8e-06 0.00048 20.3 6.5 1 23 535 557 535 557 0.99

14 16 1.6e-05 0.00096 19.4 3.0 1 23 563 585 563 585 0.98

15 16 0.00019 0.012 15.9 4.6 2 23 592 613 591 613 0.97

16 16 5e-05 0.0031 17.8 6.2 1 23 619 641 619 641 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.4e-06	0.00046	20.4	1.6	2	23	95	116	94	116	0.98
2	16	0.00037	0.023	15.0	1.4	1	23	122	144	122	144	0.96
3	16	0.21	13	6.4	6.3	1	23	150	172	150	172	0.98
4	16	2.1	1.3e+02	3.2	1.4	1	11	178	188	178	191	0.86
5	16	0.0027	0.17	12.3	0.2	2	23	196	217	195	217	0.97
6	16	1.3e-05	0.00081	19.6	4.3	1	23	223	245	223	245	0.98
7	16	0.0031	0.19	12.2	3.7	1	20	251	270	251	273	0.94
8	16	0.003	0.19	12.2	0.4	1	20	385	404	385	405	0.93
9	16	3.1e-07	1.9e-05	24.7	1.3	1	23	419	441	419	441	0.98
10	16	2e-07	1.2e-05	25.3	2.2	1	23	447	469	447	469	0.99
11	16	5.3e-05	0.0033	17.7	1.5	1	23	475	497	475	497	0.99
12	16	2.2e-07	1.4e-05	25.2	2.5	1	23	507	529	507	529	0.98
13	16	7.8e-06	0.00048	20.3	6.5	1	23	535	557	535	557	0.99
14	16	1.6e-05	0.00096	19.4	3.0	1	23	563	585	563	585	0.98
15	16	0.00019	0.012	15.9	4.6	2	23	592	613	591	613	0.97
16	16	5e-05	0.0031	17.8	6.2	1	23	619	641	619	641	0.99

Sequence Information

Coding Sequence: ATGAGCACAATAATAGATGTGTCCTGCGTGAAAGTGGAGCAGGATCAGGAACAAGAGACGACGCAAGTGGATGTTATGCTGAGGGATGCCATCTGCAGcaatataaaaactgaaagcaATTTAATGGAAATGGATATTGGACCCGTTAAAATAGATCCGTATATGTCGGCAGAGCTCCATAGTGCGCCAGCCGCTGGCAACCCAAGGAGTCGAAGTCGGAAAAAGCAGAGACCTGAAGCTAAAAACGAacACAGCGACCACACGCCTGCCAAAGGCCCCAATCAGTGCCCCCACTGTCCGCGGCATTTCGAGAGACGTGACGAACTCGAGATACATCTGCAGATACACACCGATAAGCTGCCCTACAAGTGCGCTTACTGTCCAATCAGTTTTTCACATAAATCGATTTATACGGCACACATGTACGGGCATACGGGCAAGTTTCCCCATCAATGCACCGAATGCTCGCAGGGCTTCCTTAAGTACTGTGATCTCAACAAGCATCGACGCTCACATACCTCTATTAACGCACACAAGTGTCCTTTGTGTCCCAAGAATTGCATACACACGGGCAAAAGTCTGCTGCAGTGTCCGCAGTGTCCACGCGGATTTCTTAAGAGCTTTGAGCTGAGAATCCATCTTCAGATTCACAGCGATAAGTTGCCGTACAAGTGTCCGCACTGTCCGAATAGCTTTGCGCACAAATCGAATTATATAGCGCACATCTGCGAGCATACGGGAGATTTTCCGCACAAATGTCATCACTGTCCGCGTGGCTTCATGAAGAGAAACGAGCTGTTGAAGCACATATGGATTCATAACGAATTAAGGGCGCGCCAATGCCGCACCACAAAGGACGCGACATCTGGAGAAAGCGTTGAAGCGACCGAAGACATTAGTAATAACAAAAAGGAGCAGGTGGTGCTGGAGAAGCTAAGCAAGCCCCCTTTGAGTTCAGCCCAAGTTAAGGTCAATGCAAAGGAGGATCGGTTGAtcagcaaaaaaatcaaagtgcCTGCGGAAGAACTTGTTTCAACTGTCCGCATTAAAGATGAACCAGTTCTCAACGAAAATAGTGCCTTAGATACGTTGGAGAGTAAAAATGTTAATCTGCAGCCAGTCAAAACGGAACCAGAGGAGCAGAGGAGATCCCATGTATGCAAGATCTGCAGCAGGAAGTTCGCAAACATAAAAGACCTACGACTGCACGAAAATTGCTACACTCACTCCAGCCGGGAGACGGGTAAACGGCCGTATAAATGTGATCGGTGCTCGAAGTCTTTTGCTCAGTCCTACAGCCTGACGGTGCACATGCGCGGGCATACGGGCGAGCGGCCGTACAAATGTCCGCACTGCACGCGAACGTTTATACAGAATTCGGGTCTTAAGGTGCACATACGACAACATTCCGGCGAAAGGCCATATAAATGTGTCCTCTGTTCGCGCACTTTTGCCAACGACTCGAATCGCAAGAAACACATGCAAATTCATGGCGCCGACGTTGCCAGCGATCATCCGTACAAATGTCCGCATTGTCCgaaaacttttgcacaaaactcGCACTTTATTGTCCATGTACGTGGACACACCGGCGAGCGTCCCTATCAATGCACCCATTGCACGAAGGGCTTTAAAGTGAGTCACGATCTGAAGAAGCATCTGCGTAGCCACACAGGCGAGCGTCCGTACGAGTGTTCGCATTGTGCGCAAACCTTTGCCCAGAATTCGCATTTCAATGCACACCTCCGTGGACACACCAGCGAACGACCCCTCAAGTGCCCCCACTGCCCGCGCACCTTTCTGAAGAGCTACAATCTGAAGGTTCATTTGTGCACCCACACTGGAGAGCGGCCGTACAAGTGTCCGCACTGTCCACAAACCTTTACTCAAAACTCTTATTGCAACGCGCACCAGCGTAAGCATTCAAAGTTGAATGAAATATTATGA
Protein Sequence: MSTIIDVSCVKVEQDQEQETTQVDVMLRDAICSNIKTESNLMEMDIGPVKIDPYMSAELHSAPAAGNPRSRSRKKQRPEAKNEHSDHTPAKGPNQCPHCPRHFERRDELEIHLQIHTDKLPYKCAYCPISFSHKSIYTAHMYGHTGKFPHQCTECSQGFLKYCDLNKHRRSHTSINAHKCPLCPKNCIHTGKSLLQCPQCPRGFLKSFELRIHLQIHSDKLPYKCPHCPNSFAHKSNYIAHICEHTGDFPHKCHHCPRGFMKRNELLKHIWIHNELRARQCRTTKDATSGESVEATEDISNNKKEQVVLEKLSKPPLSSAQVKVNAKEDRLISKKIKVPAEELVSTVRIKDEPVLNENSALDTLESKNVNLQPVKTEPEEQRRSHVCKICSRKFANIKDLRLHENCYTHSSRETGKRPYKCDRCSKSFAQSYSLTVHMRGHTGERPYKCPHCTRTFIQNSGLKVHIRQHSGERPYKCVLCSRTFANDSNRKKHMQIHGADVASDHPYKCPHCPKTFAQNSHFIVHVRGHTGERPYQCTHCTKGFKVSHDLKKHLRSHTGERPYECSHCAQTFAQNSHFNAHLRGHTSERPLKCPHCPRTFLKSYNLKVHLCTHTGERPYKCPHCPQTFTQNSYCNAHQRKHSKLNEIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00541892;
90% Identity: iTF_00541892;
80% Identity: -