Basic Information

Insect: Drosophila paracracens
Gene Symbol: salm
Assembly: GCA_035044025.1
Location: JAWNMN010000835.1:1335020-1346199[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.1e-06 0.00034 20.9 0.9 1 23 521 543 521 543 0.98

2 7 1e-05 0.00067 19.9 2.1 1 23 549 571 549 571 0.98

3 7 0.017 1.1 9.8 1.5 2 23 973 994 972 994 0.98

4 7 7.3e-08 4.8e-06 26.7 0.5 1 23 1000 1022 1000 1022 0.98

5 7 0.00022 0.015 15.7 2.3 1 23 1032 1054 1032 1054 0.98

6 7 0.029 1.9 9.0 2.9 2 23 1472 1493 1471 1493 0.97

7 7 2.8e-08 1.9e-06 28.0 1.3 1 23 1499 1521 1499 1521 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.1e-06	0.00034	20.9	0.9	1	23	521	543	521	543	0.98
2	7	1e-05	0.00067	19.9	2.1	1	23	549	571	549	571	0.98
3	7	0.017	1.1	9.8	1.5	2	23	973	994	972	994	0.98
4	7	7.3e-08	4.8e-06	26.7	0.5	1	23	1000	1022	1000	1022	0.98
5	7	0.00022	0.015	15.7	2.3	1	23	1032	1054	1032	1054	0.98
6	7	0.029	1.9	9.0	2.9	2	23	1472	1493	1471	1493	0.97
7	7	2.8e-08	1.9e-06	28.0	1.3	1	23	1499	1521	1499	1521	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACTTGCAAAACGTTCTGTGTGCAATGCGTAGTGACTTCAAGGATAATCACCAGGagaccataaataaaatgatacaATTTGGTACCGTTAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCCAGAAGCGCCGAAAAAGACATCGCAAGTGATCAGGAAGATAATGGCGCCTGCTCGCCGCTGACAACGGCGACACCGGCCAGCGCCAGTGCTGGGAACAGTCCCTGCCCCAGCCGCAGTCCGCGGCGccacagcgacgacgacgacgagttGGCTGGCGAAAGGGATTTACTGCAAGTTGTCGATAATAAGGAGGATACAAAGGATAAACAGGATAAGCCGGATAAGCTGAAGGAGAGCGTGGAGAGTGTGGAGCAAGTCGATAGCCGGACCGATGCGACTATCGAGGatcacaatcacaacaacagcagcagcaacaaccacaacaataacaacgatagcgataacgataacgatagcGATAACCACAAAGTCAAGGTCATGACAAAACCGCCCGAGGAACACGAGACAAACGCGAACGCGAACTCGAACTCATCGTTGCCCAATTCACCCACCGCCGCCACATCCAGCATGGAGGCGCCACCAAAGCaactggatgtggatgtggagaTGCCACAGGCGGAGCACGAGAAGAGTCCAGCGACGCCGCCGCCGGTCagcaatgcaacagcagcaacagcaacagcagctgcagccgctgcagccgcCCAACAATTTGGGGCAACACCCGTCACCCTGGAGGCGATTCAAAACATGCAGATGGCAATCGCCCAGTTTGCGGCCAAGACCATTGCGAATGGCGCCTCCGGTGCGGACAACGAGGCGGCCATGAAGCAGCTGGCCTTCCTCCAGCAAACGCTCTtcaatctgcagcagcagcaactctttCAGATTCAGCTCAtccagcagctgcaatcgCAGCTGGCGCTCAACCAGGTCAAGCAGAGCAACGAGGACGACGCTGACGATGATGCGGAGCCCGAGGAGCGTGAGGATGGCGAAACGGACACctacgaggaggaggagcgcaTTGCCGACATGGAATTGCGACTGAAGGCCGAGGCTCGCATGGCCGAGTCCAAGGCGCGCCAGCATCTCATCAATGCGGGAGTTCCGCTGCGCGAACGTTCTCATTCCCGTTCCcattcccgttcccgttccgcCTCCCCCTCGCCCAGCCCCTCGTCGCCAGCTGTCTCTTTAAAGCGGAAGCGGGAAGAAGATGCCGGCGCCAAGTCTGCTGGTGCTAGGAGCTTTGGCCAGCCGGTGGAGAGCGCACAGGATGCGCTGTCCAAGCTGAAGGAGATGGAGAATATGCCGCTGCCCTTTGGCAACGATTTGGCATCCAGCATCATAACGCATCACGATGATCTGCCCGAGCCGAACTCCCTGGATCTGCTGCAGAAACGAGCGCAGGAGGTGCTTGATTCGGCCTCGCAGGGCATCCTGGCCAACAACATGGCCGATGACTTTGCGTTCGGGGACAAGTGCGGCGATGGCAAGGGACGCAACGAGCCCTTCTTCAAGCATCGTTGCCGGTATTGCGGCAAGGTCTTTGGCTCCGACTCGGCGCTGCAGATCCACATACGATCTCATACGGGGGAGCGACCCTTCAAATGCAACGTCTGCGGCAGTCGGTTCACCACCAAGGGCAACCTGAAGGTGCACTTCCAGCGCCACGCCCAAAAGTTTCCGCATGTGCCGATGAATGCGACACCGATACCCGAGCACATGGACAAGTTTCATCCGCCGCTGTTGGATCAAATGTCGCCGGACAGTTCGCCCACCCAATCGCCAGCGCCGGCATCCGGCCAGGTGCCGGCCAGCTCAACGTCCACTCATCCGCCAGCGATGTCCTTCCCCGGCCTTCAAGGCCTTTATCGTCCGCCCATGGAGCTGCTGAAGTCCCTGGGAGCAGCGGCTGGCAGCACGGCCGGACTGCCGCATCCCTTCTTCCCCCAGATGCCGGGACTGGGCGCGGCTCTCAAacacagccagcaacagcagcaacagcaacagcagcagcagcagcaggttaGTCAGGATTTGCCCACAGACTTGCGCAAGTCTTCTGGTCCCAGTTCACCACACGACGAGGAggaagatgatgatgacgatatGACTGCTGTGCGGCTGCCCGTCAAAGCGGAACTGCTCGAGGAGGAGAAGACGGAGCCGGAGACAGCAGCGACGTCTGCCGAATGCGCTGACTtggagccagagccagagccgcTGCCGCTGGAGGTGCGCATCAAGGAGGAACGCGTCgatgaggagcaggaggaggagcagcagcgggagcagcagcGGGAACAACAGGAAACATCCTCCAATCGCCACACACCAACAGCCTCGCCCACGAACCCAGTGCCAGCAACCCCGCCACTAATGCAgcgacatcatcatcatcatcagcaccatcagcaccatcatcatcatcagcagcatcatcaacatcatcatcatgccTCCCACATGCACGGCTATCCGCCGGTGGTGCAACCGATTCAACCACCAGCCATAATGCACGCCCAGTGCTCGCCCGGCTCCCATTCGCATCTGGATCAGCTGCCGACTCCTGGCCAATTGCCGCCAACGATGCCGCATCGAGAGGACTTCTTTGCCGAGCGATTCCCCCTCAACTTCACAACAAAGACACTCTCCCCCGAGCACCATTCGCCGATCCGTTCGCCAGCTGGCCATGCTCACGCCCACATTCCGCGTTCGCCCTTCTTCAACCCGATCAAGCATGAGATGGCGGcgctgctgccacgcccccacaGCAACGACAACTCGTGGGAGAACTTCATCGAAGTGTCGAACACGTCGGAGACGATGAAGCTCAAGGAGCTGATGAAGAACAAGAAGATCAGCGATCCCAACCAGTGCGTCGTCTGCGATCGCGTCCTCTCCTGCAAGAGCGCCCTCCAGATGCACTATCGCACCCATACGGGCGAGCGGCCCTTCAAGTGTCGCATCTGCGGACGCGCCTTCACCACCAAGGGCAACCTGAAGACGCACATGGCTGTGCACAAGATTCGTCCGCCAATGCGCAACTTCCATCAGTGCCCCGTCTGCCACAAGAAGTACTCCAATGCGCTGGTGCTCCAGCAGCACATCCGGCTGCACACGGGCGAGCCAACGGATCTGACGCCCGAGCAGATTCAGGCGGCCGAGATACGTGATCCGCCGCCCTCCATGATGCCTGGACATTTTATGAATCCTTTCGCGGCGGCTGCTTTCCATTTTGGTGCCATGCCTGGCGGGGGTCCGGGCAGCCATAATCCGGGCGCGGCAGTTGCTGGCATGTCGGGTGCGGCACACAATGGCGCCTTGGGCTCGGAGTCGTCGCAGGGTGATCTCGACGACAACATGGACTgtggcgatggcgatgattTCGATGACGCCTCCTCGGATCATCTCTCCAATGATCCGGCGTTGGGCGACGAACGTCCGCGTTCCGGCGACGACTTCAAGTCGCTGCTCTTCGAGCAGAAGCTGCGCATCGATGCCACCGGCGTGGTCAACATCAATAGTCATCATCCGCAtccacattcgcattcgcatccaCTTCATCAGCATGCGCGTCCTCGTTCCGCGGCCAGCAATCCGAATTCGATTGGCTCCGCTTCCGCCTCGCCCTCCGCGCCTGCCAGTCCCAGCTCTCAGCCCAAGCCGAGCTGCTCGCCGGTGCGATCCGTCTCGGAGGCATCGCAGGGAGCGCTCGACTTGACGCCACGTGCCGTCGCTGCTGCCCCGTCGCAGCCGCTTGCCTCCCCGCCCAAGGAGAAGACGGTGAGTCCGCTCAGCCAGCAGTCGACGCCTGCACGCAGTCCCAATACCTCCGtctccgcctccgcctctgcctctgtcgcTGCCTCGCAGCTGCTCTCCTCGCAGCTGGCGCCGTCTGTGGGCATTGATTGCCTGCCGCCCGGTTTGCAGcatcatctgcagcagcagcatcagcatctgaTGCAGCAACAGGCGgcggtggcagctgcagcggctgccCAACACCATCACCATCAGATGCAGCAGCATGCGGCCGCactgcatcagcatcaggaGCAACTGCGTCGCGAGGCACAGGAAGTGCAACAGaaagcggcagctgctgcagcagcggctgctgcccAGCGTCAGACATCGCCACAGCCACCGACGCGGGCCGGCGAATCACCTGGTGGTCCGCCCGTTGGTGGGCAGCCCAATCCGTTGATCGGCGCCCGGCCGCCCTTCGGCATGTTCCCCAATCTGCCCATCTTCCCGCCGGCCACCACGCAGAACATGTGCAATGCCATGAATCAGATTGCCCAATCGGTGATGCCAGCGGCACCATTCAATCCGCTGGCATTGAGCGGAGTGCGGGGCAGCACCACCTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCGGCGCTCGAGATTCACTACAGGAGCCACACCAAGGAGCGCCCCTTCAAGTGCAACATCTGCGATCGCGGCTTCACAACTAAGgGCAACCTCAAGCAGCACATGCTGACACACAAGATCCGCGACATGGAGCAGGAGACCTTCAGGAATCGAGCTGTAAAGTATATGAACGAGTGGAGCGATGAACGCGAGTAA
Protein Sequence: MKNHLQNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSAEKDIASDQEDNGACSPLTTATPASASAGNSPCPSRSPRRHSDDDDELAGERDLLQVVDNKEDTKDKQDKPDKLKESVESVEQVDSRTDATIEDHNHNNSSSNNHNNNNDSDNDNDSDNHKVKVMTKPPEEHETNANANSNSSLPNSPTAATSSMEAPPKQLDVDVEMPQAEHEKSPATPPPVSNATAATATAAAAAAAAQQFGATPVTLEAIQNMQMAIAQFAAKTIANGASGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKQSNEDDADDDAEPEEREDGETDTYEEEERIADMELRLKAEARMAESKARQHLINAGVPLRERSHSRSHSRSRSASPSPSPSSPAVSLKRKREEDAGAKSAGARSFGQPVESAQDALSKLKEMENMPLPFGNDLASSIITHHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKCGDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTQSPAPASGQVPASSTSTHPPAMSFPGLQGLYRPPMELLKSLGAAAGSTAGLPHPFFPQMPGLGAALKHSQQQQQQQQQQQQQVSQDLPTDLRKSSGPSSPHDEEEDDDDDMTAVRLPVKAELLEEEKTEPETAATSAECADLEPEPEPLPLEVRIKEERVDEEQEEEQQREQQREQQETSSNRHTPTASPTNPVPATPPLMQRHHHHHQHHQHHHHHQQHHQHHHHASHMHGYPPVVQPIQPPAIMHAQCSPGSHSHLDQLPTPGQLPPTMPHREDFFAERFPLNFTTKTLSPEHHSPIRSPAGHAHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGGPGSHNPGAAVAGMSGAAHNGALGSESSQGDLDDNMDCGDGDDFDDASSDHLSNDPALGDERPRSGDDFKSLLFEQKLRIDATGVVNINSHHPHPHSHSHPLHQHARPRSAASNPNSIGSASASPSAPASPSSQPKPSCSPVRSVSEASQGALDLTPRAVAAAPSQPLASPPKEKTVSPLSQQSTPARSPNTSVSASASASVAASQLLSSQLAPSVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEVQQKAAAAAAAAAAQRQTSPQPPTRAGESPGGPPVGGQPNPLIGARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDERE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00499142;
90% Identity: iTF_00528350;
80% Identity: -