Basic Information

Insect: Drosophila paracracens
Gene Symbol: salm
Assembly: GCA_035044025.1
Location: JAWNMN010000835.1:1408393-1416036[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.4e-06 0.00016 21.9 1.7 1 23 366 388 366 388 0.98

2 8 3.4e-05 0.0022 18.3 3.5 1 23 394 416 394 416 0.98

3 8 2.4 1.5e+02 3.1 2.5 5 23 660 678 657 678 0.84

4 8 3.6e-08 2.3e-06 27.7 0.2 1 23 684 706 684 706 0.98

5 8 0.0011 0.07 13.6 0.9 1 23 716 738 716 738 0.98

6 8 0.054 3.5 8.2 0.1 2 23 945 967 945 967 0.96

7 8 1.2e-05 0.00076 19.8 5.0 1 23 1114 1136 1114 1136 0.96

8 8 9.2e-08 6.1e-06 26.4 0.7 1 23 1142 1164 1142 1164 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.4e-06	0.00016	21.9	1.7	1	23	366	388	366	388	0.98
2	8	3.4e-05	0.0022	18.3	3.5	1	23	394	416	394	416	0.98
3	8	2.4	1.5e+02	3.1	2.5	5	23	660	678	657	678	0.84
4	8	3.6e-08	2.3e-06	27.7	0.2	1	23	684	706	684	706	0.98
5	8	0.0011	0.07	13.6	0.9	1	23	716	738	716	738	0.98
6	8	0.054	3.5	8.2	0.1	2	23	945	967	945	967	0.96
7	8	1.2e-05	0.00076	19.8	5.0	1	23	1114	1136	1114	1136	0.96
8	8	9.2e-08	6.1e-06	26.4	0.7	1	23	1142	1164	1142	1164	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATatttcgcaatcgcatcaaTTATCGGGGCACAGGAACACGCAGTGGCGCCTCCAATGGCGGAGGAGGTGGAGGCAGCAGCACAGATCCCACCGGCGAACGGGAGAGTCTCCTGGCCAAGGAACTGAATGCggacagcaataacaatgcggCGGATGAGACAATCGAGCCGCaaatggagatggagatggagctgcagctggagaaggagagggagagggagaaggAGAAGCAGTCGGAGACATCAGTGCCCAGCTCCGATCAGCCAGAGAACAGCAACGAGGCATTGGATCTGTCTGTCATCTCGGGCAATCGCCTGCCCAGCAGTGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCTGTGGCTCAGTTTGCGGCCACGGCGCTGGCGGCGGCATCCACGGATCCCAGTGATCTGGCCATGGTCCAGTCGACCATCTTCAATGTGCAGCGACAGCATctgatgcagctgcagctcatccAGCATCTACAGAGTCAATTGAAGCGGGCGGGGGGCGTGGTCGCCGCCCTCAGCCGGCAGGGCCAAAACTATGCCGAGCAGGATGAGGATGAAGCGGGCGAGGAGGCAGAAGATGTGGAAGACTTGGAAGAGGAGCAGCAACTGTCGATGCCATCCAAAGACACGTCGCGAGTGAACGGGGAGCGAACCGAACTGGATCATGCAAGGCTGGAGGAGAGTTCAAAGACTGATGACGAGTGCAATAGGCTGGGAGAGAGACCAAGCCGAGACTTGGCCAGGGAAAGAGTCCGGGAGAAGACCAAGACGGAGGCagaggcggaggaggaggggcAGGCTGCAGGCGAACTTGAGCACGAGCTTGCCGAGAGCGAATACAAGCCGCTGATGTGCGACATAAGCTCCAGTCTGGCGGCCAGCATCATCACCAATCATGATCCGCCGCCGGCGCCCAATGAGCCCAACTGCCTCGAGATGCTTCAGCGTCGCACCGAGGAGGTGCTGGACTCAGCATCGCAGAGCCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAGTATGCCTCCAAGGAGGCGCAGAGTCGCGGCGAGATCTTTAAGCATCGCTGCAAATATTGTGGCAAAATCTTTGGCAGCTATTCGGCGCTCCAAATCCATTTGCGTTCGCATACCGGCGAGCGACCCTTCCACTGCAACGTTTGCGGCAGCAAGTTCACCACCAAGGGCAATCTCAAGGTGCACTATCAGCGGCACACCCAGATCTTTCCTCCCATGCTGATGCCAGCCGTGGTCAATGGAGTCACTGCACCCGAGCAATTTGCCGCCATTCGACTGCCGTTTGtgacaccagcagcagcagcagctgcaccacTGGCAGCAGCcctaccaccaccaccaccaccaccaccacccccgccgccgctgccgctgccgctgccgcccaGCAACGAACAGGAGCTGCAGGAGCCAGCAGCTGTGGGTCGACTGCAGCAGGCCGAGGATCTAAGCAAGCCACTAGCCAGGGAACTGTCGCAGTCGCCCGAGCAAGTCAGCCAAACCAAGTCGCTTATGGAGCCAATCGCATTGGTGTCGCCCGATAAACAGGacaaggagcaggagcagatgAAGAACAGTCCCAAGCCAACGACGCCGCCAACGCCAGCTGCGCCCTCGCCAACCACAAGCAATCGTCGCAATGGCAGTGTTCGCAAGCGGCAGACCAGCCAGGCGGGCAGTCCGCCTGGCGAGGAGCATCCGCATGCCGAGCACCACTCGCACCTGGTCAAGTTGGTGCGTCGCTCCTCGGCGAGCCGGGATGGGTTGACGGCGATGCCCGGCGAGTATTCGCTGGCGCAGATGGAGCGGATTATTGACAAGTCGTGGGAGGATCTGATTGAGATCGACAAGACGTCGGAGACAtcgaagctgcagcagctggtcGACAATATCGAGAACAAGCTGACCGATCCCAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGTCGCAGCTCCCTGCAGATGCACATACGCACCCATACCGGAGAGCGACCCTTTCGCTGCAAGATCTGCGGACGCGCCTTTGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCACAAGATCAAGCCACCGATGCGTAGCCAGTTCAAGTGTCCCGTGTGCCATCAGAAGTTCTCCAACGGCATCATTCTGCAGCAGCACATTCGCATCCATACCATGGACGATGGCAGCGCTGGCCATGCTCAGCTGGCGGGTCAAAGTGGGGATGTGGAACGCTTGGGCATCGAGGATCAGAACTCGAACAAGTCGCTGGGCACCTCGGACACGCTGGACTTCTCGACGACCGTCTCGGATCATTCGGGTCAGCGATCGGAGTCGTCGCAGGGTGGCGACTTCGATGAGTTCATGACCATGGACAGCACCGATGATTCCCGTGACAATTCCAGCGCAGTGCTCGATAGGGAACGAGATCGAGATAGAGATCGAGATCGAGATAGACGCCTGCCTGGGCACGATGATGAGCGCTCCCGTTCGGATGATGTGGAGGGCAGCGGACGCGAAAGTGCCAGCGGCGAGATGCCCGCCATGGATCTATCATCACCATCGCTGGCGCGTCTCTTTGGCGGCAACAGCGGAGCAGccggagttgctgctgctgctgctgccggttcAGGCGGCTTACCCATGTTGCATGGCATGCCGATGCCACCGAATCTACTGCTGATGGCCGCCGCCAGGGAGGAGATGCATGCGCTGGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTCGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATGCGTTATCATCCTACGGTGCAAAGCTCACTCTCAATCCGAATCTGTTTGCCAAGAAGCCGAAGCCATGCTCGACGCTGGAGATGGCGCCTGCGGATGCAGTCATGCCATTGTCGGCATCCATTAAAGAGGAGCCCGAAtccgagcagctgcagctgcttgatGAAGGTGGGTGCGACAGTGGCACAAGTAGTGCTACTTCTGCTGCCGCCCCGgctccagctgctccagctggctatcagcatcagcaggagGCTGCCGCCGATGCGGAGCAATCGCTAATGAAGATGCAGTTGCATGCACATCGCTTTCCGGCTGGTCCGCTCGACTTTCAGCAGGCCCTGATGTCGGCCGGCCCGCCCAGCTCTAGCCTGGATCCGCCGGTGAATAACAAGCACTTCTGCCATGTCTGTCGCCGCAATTTCAGCTCGAGTTCGGCACTCCAGATTCATATGCGCACCCACACCGGAGATAAGCCGTTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACGAAGGGTAACCTTAAGGTTCACATGGGCACCCATATGTGGACGAATCCGACATCGCGTCGCGGCCGTCGCATGTCCCTGGAGTTGCCGATGCGGCCGGGACCTGGCCCGGGCCCGGGCCCCGGTGCCCCACATGGTGTGCCAACCGCTGAGCAGGAGTTCATGCAGCGACGCCCAGAACTCTTCTTCCCCTATTTGCCACCCTTCTTCAACGGAATGCCACCCAAACCCGGCGAATTGAGTCCTGGCGCTTTTGCCAACATACCTCCACCGCATTTTGCAAACGGAGCCAAGTATCCATATCCACCGGGTCTGCTCAGCTTTCCCGGCTTTCtaggtggtgctggtggtcaTCACCAGCATCCCTATGGCGGCGTGGAGCGGGGCAACAGCAAGTCACCCACATCGGAGCCGGCGCAGAGTCCTGCTTCGCGTGAGGACGACTCGGGTCTCAGCAATAACATCTGGCATCCGCTGAGCAGCATTAAGATGGAGAGCAATCAAAATGAGGGTGCTGGCAATCAGAGCGAGCAGGAACAGGAACCGGAACTGGAGCAGGATCACGAGGATAATAAGAGCGGGGGCATCGATGCGGATGGCGAGCCTGAGGCGGACGCTGAGGATTCAGCTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGASNGGGGGGSSTDPTGERESLLAKELNADSNNNAADETIEPQMEMEMELQLEKEREREKEKQSETSVPSSDQPENSNEALDLSVISGNRLPSSGHVALEALQHTKVAVAQFAATALAAASTDPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQNYAEQDEDEAGEEAEDVEDLEEEQQLSMPSKDTSRVNGERTELDHARLEESSKTDDECNRLGERPSRDLARERVREKTKTEAEAEEEGQAAGELEHELAESEYKPLMCDISSSLAASIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPAVVNGVTAPEQFAAIRLPFVTPAAAAAAPLAAALPPPPPPPPPPPPLPLPLPPSNEQELQEPAAVGRLQQAEDLSKPLARELSQSPEQVSQTKSLMEPIALVSPDKQDKEQEQMKNSPKPTTPPTPAAPSPTTSNRRNGSVRKRQTSQAGSPPGEEHPHAEHHSHLVKLVRRSSASRDGLTAMPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAGHAQLAGQSGDVERLGIEDQNSNKSLGTSDTLDFSTTVSDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAVLDRERDRDRDRDRDRRLPGHDDERSRSDDVEGSGRESASGEMPAMDLSSPSLARLFGGNSGAAGVAAAAAAGSGGLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDALSSYGAKLTLNPNLFAKKPKPCSTLEMAPADAVMPLSASIKEEPESEQLQLLDEGGCDSGTSSATSAAAPAPAAPAGYQHQQEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGPGAPHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLSFPGFLGGAGGHHQHPYGGVERGNSKSPTSEPAQSPASREDDSGLSNNIWHPLSSIKMESNQNEGAGNQSEQEQEPELEQDHEDNKSGGIDADGEPEADAEDSAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525326;
90% Identity: iTF_00558916;
80% Identity: -