Dpar001781.1
Basic Information
- Insect
- Drosophila parabipectinata
- Gene Symbol
- -
- Assembly
- GCA_018153455.1
- Location
- JAECYA010000178.1:13335870-13338991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.9e-05 0.0059 16.9 2.6 1 23 174 197 174 197 0.96 2 13 0.0069 0.52 10.7 2.0 1 23 214 237 214 237 0.93 3 13 0.0074 0.55 10.7 4.4 1 23 310 333 310 333 0.96 4 13 0.0018 0.13 12.6 0.7 2 23 390 411 389 411 0.95 5 13 0.0086 0.64 10.5 0.5 1 23 555 577 555 577 0.96 6 13 0.0035 0.26 11.7 2.2 1 23 584 607 584 607 0.96 7 13 0.00015 0.011 16.0 2.4 1 23 615 637 615 637 0.98 8 13 0.0052 0.39 11.1 0.1 2 22 664 684 663 687 0.90 9 13 0.0029 0.21 12.0 1.5 1 23 722 745 722 745 0.95 10 13 3.4e-05 0.0026 18.0 0.4 1 23 792 815 792 815 0.96 11 13 0.011 0.79 10.2 0.2 1 23 825 847 825 847 0.96 12 13 4.2e-05 0.0032 17.7 2.1 1 23 853 875 853 875 0.99 13 13 1e-05 0.00076 19.7 1.2 1 23 881 903 881 903 0.97
Sequence Information
- Coding Sequence
- ATGACCAGGACATGCAGAATATGTGGCGGAACCGAGGGGCGGTACTGGATCGAAACGCCCGTGGAAAAGTACGCCGGGAAGACTTTCGTGCAGTTATTGACAGAACTGACCAGAATTGAGGTGGCTGCACTTTTGATCGAGAAATTGCCCCAGTGGATCTGCGCTGGGTGCTCCCATAAACTGGAAACGGCCTATGAACTAGTGATATTAGCTCGAGAGACTCATAATCTGTGGATGCAGAAGTTAGACGACGAAGTTAAGGATCGAGGCGATGAGTCTCAAGGGCTTGAAGCACTGGAGTGCCTCAACGAGACACCTATCCACCTGGTTGATATCGAAGGAGTGACAATAAAAACGGAGGAACTAGACCATACACCTCCAGTCGCCAGGAAAGACCCTCTCGTACGTCCTCACCTTGTCAAGAGGCGTATTACACATTACAGTGATCCTGATGACGACCAAGACGATGTACCGCTTCGCCAGCACCGCAAACACTTGTCGTTTTCTGTTCAAAAGCTGCATATTTGCAGTATCTGCAACAAGGCCTTCCGATATGTAACAAATCTGTATCGACACAGGCAGAGGGACCATGGTGCGCCCGGAAAACCAGGAACTGACTTGGACGAAGATGAAAACTACTATAAGTGTGATCATTGCGACAACTCATTCAAGTATGTTTTGGAGTTGGTGAAGCACAACCAAAATGAACACGATAGTAGTCTGCTGCCCTCCAACACTTACCTAGAAAAATATAAAATGTCTCGCCGACCAACACAAACGACCGTTGAGGCAAGCCCATCCAGTCCTGCATCTACTTCAGGAACTTCTTCGCAGCGAAAGAAAACCAACAGCGACACATTGGTGCACAGCTTCATCAAGACCGTAGTGCTCTCGGATGAAGATGAAAACAGCAGCTCCGACCACTACTATAAGTGCGATCAGTGTACAAAGTCATACAAATACGTCATTAGTCTCATCAAGCACAAGCATAGCAAGCATTCCACAGAAGAGGGTCAGTCAGGAAGAAAGGAGGTCGAGGAGGATGAGCATATTAGTGCGTCTGCGTCAAGGGTTTCTGCAGCTGTACTGCCAAAGCCATCAAGGATTAACCGACGCGTCAATGGATTTGATCTTCATCGATGTGAGCCCAATGGGGCTAAGGAAATTAAGTGCATGATTTGCTTGAAACGGTTTACGAAGCTTCGCCAGTTAAGAGATCATCTAGAAGCGCATCCAACTGACTTTGATTTCAATGCACATGGGGAACCAATTGAAAGAATTGCCGAGGGATTCTTCAAGACCGCTGTAGAGTCGACGCCAGAGGGCTTGAAGCGTCGAATATTGAGAGATTTGAGAATGGGGGTTTATGGGCGATATTATTCCATCACAAATCAAGCTCGTTACGAAATGAGTCTGGATAGTTCGGATACAGACAGTGATGGTGATGGTGAGGATGTTGTGGTGAGACGTAGCTATGTTTGCGATCTGTGCAATGATCCGGATGCTAGGTGGCCGCGAAAATATCAATTACACAAGCACCATCTTCAGGAGCACAACTGGTTAGACGCTCCACACGTCTGCCTGCGTTGCGATTCCAGGTTCTTGAACGCCGATCTTCTGGATCACCATACCAGCCAACTGTGTCAAAATACCCTTAAGAGATTCATGTGTGACAAGTGTCCACAGCGTTTTTTTTGGCGCAGGAATCTTCGCGCCCATCTTGCCGAGCATAAGAGCAAGCAAGAGATCTACCATTGCGATCAGTGCTCTCGTAGCTACCAGGACAAGAGTGCCGTAACCAAGCACAAGTTAATGGTGCACCGGGAAGGTAGCGAGGAACTATTTCCCTGCCGTTGGTGCACTCGCACCTTTTACCGGCCCGCCTTATTGCACAAGCACGTCAAACGGCATGGATTTAGTGGCGATGACCTGCCGTTGGCAGAAACTCTATTGGCAGATGCCGCCAAGCCGTCTAGGCCGAAAAGTATCCAGTGCAAGCTGTGTGAAATCCAGTTTATCAGCGTGGTGGATCTACAACGACACATCTCCATGCAGGGCCACAGTGATCAGCCATCGGCCTACATGATAAGCACGGAAGCTGGCTTCGAAATGCTAATAGACGATACCGATGATAGTGATGAGGAGAGCTCCTCAGGCAGAAGCTACTTCTGTGATCTGTGCCAGCTCAGTTTCCGGCGTAGAAAAGACATAAACGAACATCAGTACTCCCTGCACAGCTTCGATAAGCTGCCATATGCCTGCGAGCACTGCATCTTTAAAACTGTGGATAAGCACCTGGCCACCCAGCACCAAACAAAACAGCAAACCATTCCGGAACAACAGGCACCACTGAGGCGGAAGAGAAGGTTCCGCTATCAGTGCCCTCATTGTTGGCGATCCTTTGTGGCTCAGCCTAGTCTAGACAAACACATCCGAGACATGCATGTGGCCAAGAGAAACGTGGGAAAGAAGTATCTCTGCTCTCTGTGCGGCTTAGAAGCGCAAACTCCCAACAAACTGAGCATCCATATGCGGCGGCACATGGGTGAGAAACCATTTAAGTGCGATCTCTGTGACATGCGCTTTACGGTTTTCTACGAGCTGAAGGTCCACCGGCGAAAGCACACGGGCGAAAGGCCCTACCAGTGCACCTTCTGCTCCAAGGAGTTTGCCCGCCCCGATAAGTTACGCCGACATGTTTTTATCCACAACGTAAAATCGTAA
- Protein Sequence
- MTRTCRICGGTEGRYWIETPVEKYAGKTFVQLLTELTRIEVAALLIEKLPQWICAGCSHKLETAYELVILARETHNLWMQKLDDEVKDRGDESQGLEALECLNETPIHLVDIEGVTIKTEELDHTPPVARKDPLVRPHLVKRRITHYSDPDDDQDDVPLRQHRKHLSFSVQKLHICSICNKAFRYVTNLYRHRQRDHGAPGKPGTDLDEDENYYKCDHCDNSFKYVLELVKHNQNEHDSSLLPSNTYLEKYKMSRRPTQTTVEASPSSPASTSGTSSQRKKTNSDTLVHSFIKTVVLSDEDENSSSDHYYKCDQCTKSYKYVISLIKHKHSKHSTEEGQSGRKEVEEDEHISASASRVSAAVLPKPSRINRRVNGFDLHRCEPNGAKEIKCMICLKRFTKLRQLRDHLEAHPTDFDFNAHGEPIERIAEGFFKTAVESTPEGLKRRILRDLRMGVYGRYYSITNQARYEMSLDSSDTDSDGDGEDVVVRRSYVCDLCNDPDARWPRKYQLHKHHLQEHNWLDAPHVCLRCDSRFLNADLLDHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLAEHKSKQEIYHCDQCSRSYQDKSAVTKHKLMVHREGSEELFPCRWCTRTFYRPALLHKHVKRHGFSGDDLPLAETLLADAAKPSRPKSIQCKLCEIQFISVVDLQRHISMQGHSDQPSAYMISTEAGFEMLIDDTDDSDEESSSGRSYFCDLCQLSFRRRKDINEHQYSLHSFDKLPYACEHCIFKTVDKHLATQHQTKQQTIPEQQAPLRRKRRFRYQCPHCWRSFVAQPSLDKHIRDMHVAKRNVGKKYLCSLCGLEAQTPNKLSIHMRRHMGEKPFKCDLCDMRFTVFYELKVHRRKHTGERPYQCTFCSKEFARPDKLRRHVFIHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550395;
- 90% Identity
- iTF_00488209;
- 80% Identity
- -