Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: -
Assembly: GCA_018153455.1
Location: JAECYA010000178.1:18520270-18523327[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.13 12.6 1.9 1 23 198 221 198 221 0.97

2 12 0.00019 0.014 15.7 5.4 1 23 226 249 226 249 0.95

3 12 4.1e-05 0.0031 17.8 2.1 1 23 254 276 254 276 0.98

4 12 3.1 2.3e+02 2.4 3.8 2 23 283 306 282 306 0.91

5 12 0.00047 0.035 14.4 4.6 3 23 317 338 316 338 0.95

6 12 0.0033 0.24 11.8 0.2 1 23 344 367 344 367 0.96

7 12 0.0089 0.67 10.4 0.4 2 23 378 400 377 400 0.93

8 12 0.00057 0.043 14.2 0.5 1 23 428 450 428 450 0.96

9 12 3.2e-05 0.0024 18.1 2.2 1 23 457 479 457 479 0.96

10 12 1.9e-05 0.0014 18.8 0.3 2 23 486 507 486 507 0.97

11 12 0.00035 0.026 14.9 0.8 1 23 514 536 514 536 0.99

12 12 0.00012 0.0087 16.3 3.7 1 23 542 565 542 565 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.13	12.6	1.9	1	23	198	221	198	221	0.97
2	12	0.00019	0.014	15.7	5.4	1	23	226	249	226	249	0.95
3	12	4.1e-05	0.0031	17.8	2.1	1	23	254	276	254	276	0.98
4	12	3.1	2.3e+02	2.4	3.8	2	23	283	306	282	306	0.91
5	12	0.00047	0.035	14.4	4.6	3	23	317	338	316	338	0.95
6	12	0.0033	0.24	11.8	0.2	1	23	344	367	344	367	0.96
7	12	0.0089	0.67	10.4	0.4	2	23	378	400	377	400	0.93
8	12	0.00057	0.043	14.2	0.5	1	23	428	450	428	450	0.96
9	12	3.2e-05	0.0024	18.1	2.2	1	23	457	479	457	479	0.96
10	12	1.9e-05	0.0014	18.8	0.3	2	23	486	507	486	507	0.97
11	12	0.00035	0.026	14.9	0.8	1	23	514	536	514	536	0.99
12	12	0.00012	0.0087	16.3	3.7	1	23	542	565	542	565	0.98

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTATGCGATTCCGAAAATGGCAGCAACAATTTCTTGGATCTCTACCATCCCAATTGCTGGCCCAGCGAGATGGCCCAGATACGACTGCAGTTTGTTAGCTGGAATCTTGAGATCTCCCCAAATGACGGCTTACCCCAAAAGATTTGCAGCGATTGCTTTGCTAAATTTTGCTCCATAAACGCCTTTCGAGGTGTCTGCCAGGAGGCGCAGCTGAAGTTGTCCAATATTTATGACAAGATCGATGCCAACAGCCTGGAGGAGGACGATCAAGAAGATGCTTCCTCAGACCAAGTGCAAGATGTGGAGGGAATAGGACCAGAAATAACAACAACGACGGTTTCAGCCGAAACTCCACCAAACACTGCCATTGAACCCATAGAGATTTTTGTGGACGAGGAGGAGGACTTGGAGCTGCAGCCAGACCTCGAGGAAGCCACTAGCCCGCAGCTGACCATTAGTTACACCTGTAAGTTTTGTCTGCGGCCCCAGGAAAGCTACCAGCTTCAGCAGTTGCTCCTGGAGCACATCAACACTAGCCACGACTCGGAGCAGCCGTACAATTGTCCAGAATGCGATGCCTGCTTCCAGGATGCGGCATCCCGTACCGTGCACCTCAAGAGCTGTCACGTGGAGAAGCAGCACACCTGCGAGGTGTGTGGGAAGAAGTACGGTGATCGGCACAACCTCCGTCACCACGTTGAAAAATATCACACGGACACGGACTTTGAATGTGGCCTCTGCGAGAAGCGCTTCTTCACCCGCAAAAGCCTCAACTACCATATGAAGTGGCACAACCCGGAACGCCAGCTCAAATGTCGCCAGAGTGGGTGCGAGAGGCTGTTCATCAATCAGCGCCATCTGAAATGCCACGAAGCCACTCACCTGGGAGCTAGCTCCCGGAAGAGTGAGCATTGCAGCTTTTGTGGAAAGACCTTTATTCATCTGAAGACTCTTCGCTGGCACATCTACAGACAGCATGGAGGAGAGAAACCCTATAAATGTGCCAACTGCACGGAGGTTTTTGCATCCTACGCCGAGAAACGTATCCATATGCTGGAGAAGCACAGGGAAAACCTAACCGCCATCGAGCGGAGCGAGTGTATGATGTGCCGGCAGCACTTTGCCACAGAGCAGGACCTAGCCAGCCACATGTCCGCGGAGCACCTTCATCGTCCTGGAATGCCGGTGATTGCCAACAACAAGCGCGTCCTGCAGCAGAAGCGGGAACGTCAATACTCCGGACTCTTCCAGTGCGGCAGTTGCACGCAGAGGTTCAACATGAAGTCGGCGCTGGAGCGGCACTCTGCCGTGCATTCGGAGAAGGACCGCCCGCACGCCTGTCCCCAGTGCTCCAAGAGATTCAAGCGTGTCCAGGACATGAAGTGGCACATCAAGACGCACGAGAAGGAGAAGCCAAACGTGTGTGATGTGTGCGGCAAATCCTTTGCCCTGAAGTACGTGCTAAACCAGCATCGACGCAGTCACGAGGTCTTGGAAAAGAACTTCAAATGCAGCATTTGCGGAAGAGCCTATTTATTTGAAAAGTCCTTGCGACTCCACCAAAGGGTCCACACCGGAAAAACCTACTATAAGTGCGATCTCTGCCAGGAACGCTTTGTCACGCACATCAAGCTTAAAACTCACATGCAAAAGACACACGCCTCTCAGCCCCCCTCTGAGGACACTCTCGATGATCTGATAAACATTGTGATTTCCTAA
Protein Sequence: METCRTCAISMFVCDSENGSNNFLDLYHPNCWPSEMAQIRLQFVSWNLEISPNDGLPQKICSDCFAKFCSINAFRGVCQEAQLKLSNIYDKIDANSLEEDDQEDASSDQVQDVEGIGPEITTTTVSAETPPNTAIEPIEIFVDEEEDLELQPDLEEATSPQLTISYTCKFCLRPQESYQLQQLLLEHINTSHDSEQPYNCPECDACFQDAASRTVHLKSCHVEKQHTCEVCGKKYGDRHNLRHHVEKYHTDTDFECGLCEKRFFTRKSLNYHMKWHNPERQLKCRQSGCERLFINQRHLKCHEATHLGASSRKSEHCSFCGKTFIHLKTLRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLEKHRENLTAIERSECMMCRQHFATEQDLASHMSAEHLHRPGMPVIANNKRVLQQKRERQYSGLFQCGSCTQRFNMKSALERHSAVHSEKDRPHACPQCSKRFKRVQDMKWHIKTHEKEKPNVCDVCGKSFALKYVLNQHRRSHEVLEKNFKCSICGRAYLFEKSLRLHQRVHTGKTYYKCDLCQERFVTHIKLKTHMQKTHASQPPSEDTLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00491676;
90% Identity: iTF_00615078;
80% Identity: -