Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: salm
Assembly: GCA_018153455.1
Location: JAECYA010000366.1:9556963-9565520[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7e-06 0.00027 21.1 0.9 1 23 450 472 450 472 0.98

2 7 7.3e-06 0.00054 20.1 2.1 1 23 478 500 478 500 0.98

3 7 0.012 0.92 10.0 1.5 2 23 834 855 833 855 0.98

4 7 5.2e-08 3.9e-06 26.9 0.5 1 23 861 883 861 883 0.98

5 7 0.00016 0.012 15.9 2.3 1 23 893 915 893 915 0.98

6 7 0.021 1.6 9.2 2.9 2 23 1295 1316 1294 1316 0.97

7 7 3e-08 2.2e-06 27.6 1.3 1 23 1322 1344 1322 1344 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7e-06	0.00027	21.1	0.9	1	23	450	472	450	472	0.98
2	7	7.3e-06	0.00054	20.1	2.1	1	23	478	500	478	500	0.98
3	7	0.012	0.92	10.0	1.5	2	23	834	855	833	855	0.98
4	7	5.2e-08	3.9e-06	26.9	0.5	1	23	861	883	861	883	0.98
5	7	0.00016	0.012	15.9	2.3	1	23	893	915	893	915	0.98
6	7	0.021	1.6	9.2	2.9	2	23	1295	1316	1294	1316	0.97
7	7	3e-08	2.2e-06	27.6	1.3	1	23	1322	1344	1322	1344	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACCTGTCCAACGTTTTGTGTGCGATGCGTAGTGACTTCAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGCACAGTGAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCTCGCAGCGCCGACAAAGACACAGGCAGCGATCAAGAAGAGAATGGTGGCTGCTCGCCATTGACCACGGCCACTACTACGGCCAGTCCCAGCCGGAGCCCCGAGCCGGAAGAGGAGCATCACGATCAGGATCAACAGGTATCCTCCATCAAAGAACAGGTAGAAAAGCCATTAGAATCGCTGGAGAACACAGAACTTGAATCCATAGAGGATAACAATAACAAGGTAGTAATGACAAAACCAAATTCTGAGGGCCGGGAACGGGAGCACGAGCCCAATGCCAGTGGCTCCATGCCTAGTTCCCCGGTCGCCGAGGCCAGTGCCGAAGAGGCGGCCACGGAGAGAGCCCCCGAAAAGGAGAAGGACATCGAGGTGGATGTGGAGATGGGGGAGGAGCCCAGCAGTGTGCTTCCCACCGAGATGAGAGGTCTGCCAGGAGCAGCCGGGGCGCCAGTGACCCTGGAGGCCATTCAGAACATGCAGATGGCCATTGCCCAGTTCGCGGCCAAGACCATTGCCAACGGATCCACCGGGGCGGACAATGAGGCGGCCATGAAGCAGCTCGCCTTCCTGCAGCAGACCCTCTTCAATCTGCAGCAGCAGCAGCTCTTTCAGATCCAGCTCATCCAGCAGCTGCAGTCGCAGCTGGCTCTCAACCAGGCCAAGCAGTCGGAGGACGAACAGGAGGAGGAGCAGGAGCAGGAGGTGGACCAGGATCAGGAACTGGAGACGGACACATACGAGGAGGAGGAGCGCATCGCAGACATGGAGCTCCGCCAAAAGGCAGAGGCCCGCATGGCTGAGGCCAAGGCCCGGCAGCATCTAATCAACGCCGGAGTTCCACTGCGAGAGACCTGCAGTTCTCCGGGGGAAACCTTGAAGCGGAGGAGAGAGCACGACCTGGAGTCGCAGCCTAGCCGTAGACTGAGCTCTGAGGCCTCCATCCACAAGGAGAACCACTCCTCGCAGGACGCCCTCTCCAAGCTGAAAGATCTCGAAAACACTCCCCTGCCCTTCGGTTCAGACCTGGCCTCCAGCATCATCACCCACCACGATGACCTGCCGGAGCCCAACTCCCTGGAGATGCTCCAGAAAAGGGCCCAGGAGGTCCTGGACTCCGCTTCGCAGGGCATCCTTGCCAATAACATGGCCGATGACTTTGCTTTCGGAGACAAGAACGGGGACGGCAAGGGTCGCAATGAGCCGTTCTTCAAGCACCGCTGCCGGTACTGCGGGAAGGTCTTCGGCTCCGACTCTGCCCTCCAGATCCACATCCGATCTCACACCGGAGAGCGACCCTTCAAGTGCAATGTGTGCGGCAGTCGCTTCACCACAAAGGGCAACCTGAAGGTCCACTTCCAGCGGCATGCCCAGAAGTTCCCTCACGTGCCGATGAACGCAACTCCAATCCCCGAGCACATGGACAAGTTCCACCCGCCGCTGCTGGACCAGATGTCCCCCACAGACAGCTCGCCCACCCACTCGCCGGCGCCGCCTTCCGGACCATTTGCTTCGGCCTTCCCGGGACTGCAGAACCTCTATCGTCCGCCCATGGAGATTCTGAAGAGCTTGGGAGCCGGTGCTCCGCATCCCTTCTTCCCTCAGGACCTTCCCACGGATCTGCGTAAGCCCTCGCCGCGCCTGGAAGAGGAGGAGGGGGTGACAGCTGTTCCGGTGAAGAAAGAAATCGTGGAGGAGGAGAAGGACGTGCATCAGCAGCAGCAGGCTGAGCACGAAGAGGAGGCAATGAGCCAAAGAGAAGAGGAGCAGGACAATCGCAACTCCTCGCCGGAGCCAGAGCCCCTGCCTCTGGAGGTGCGCATCAAGGAGGAGCGCGTAGATGATGAACCGGAGCAGGAGCAAGTTCACAAGGAGGAGAATCGCAGGAGTCCCTCCCCTTTGCCACAGCAGCCCTCGCCCCACCATCACCGACCCAGCCACCTTGGCTATCCTCCGGTGGTGCAGCCCATCCAGCCACCCGCCCTGATGCACCCTCAACCCTCTCCGGGCTCGCACCTGGATCACCTGCCTACACCAGGACAGCTGCCGCCTCGCGAGGATTTCTTCGCCGATCGGTTCCCGCTTAACTTCACAACCGCCAAGACCTTGTCGCCTGAGCACCACTCTCCGGTACGATCGCCCGCGGGCGCTGGAGTGCCGCCGCCTGGAATTCCACCTCCACACCACCACCCTCACCACATGGCCAGGTCACCCTTCTTCAATCCCATAAAGCACGAAATGGCAGCCCTGCTGCCTCGCCCCCACAGCAACGACAACTCCTGGGAGAACTTCATCGAGGTGTCTAACACCTCGGAGACCATGAAGCTAAAGGAGCTAATGAAGAACAAGAAGATCAGCGACCCCAACCAGTGCGTGGTCTGCGACCGCGTCCTGTCCTGTAAGAGTGCCCTCCAGATGCACTACCGCACCCACACCGGGGAGCGTCCCTTCAAGTGTCGCATCTGCGGCAGGGCCTTCACCACCAAGGGCAACCTGAAGACCCACATGGCGGTGCACAAGATCCGGCCGCCGATGCGCAACTTTCACCAGTGCCCAGTGTGCCACAAGAAGTACTCCAACGCCCTCGTTCTGCAGCAGCATATACGCCTGCACACCGGAGAGCCTACGGATCTGACGCCGGAGCAGATCCAGGCAGCAGAGATCCGCGATCCGCCGCCTTCCATGATGCCGGGACATTTCATGAATCCCTTTGCGGCTGCCGCCTTCCACTTCGGAGCTCTGCCCGGAGCAGGAGGTCCTCCCAATCCCAACCACAGCATGCACAACGGAGCCCTCGGCTCGGAGTCTTCTCAGGGCGACTTGGAGGACAACATGGACTGTGGCGAGGACTACGACGACGATGTCTCCTCGGAGCATCTGTCGAACAGTAATCTGGACCACGAGCAGAACGACAGGCCACGATCCGGGGATGACTTCAAGTCCCTGCTTTTTGAGCAAAAGCTGAGGATCGATGCCACGGGAGTGGTCAACACGAATCCTGTGCGGCCGCGATCTTCGGCCTCCAGCCATGGTGGCCACTCTGTGGGCTCCACCTCGGCCCCGACCTCACCCACCACATCGTCGGTGGTGCAGAAGCCCAGTGCCTCGCCCGCCCGCTCAGAGGCCTCCCAAGGAGCTCTGGATTTGACCCCGCGAGCTCAGCCTGCATCCAGGTCCCCCTTGCCCGCCGCCAATAAAGAGAAGCCCGTGGTTAGCAGTCCGCCCAGCCTTCCGCGCAGTCCCAGCCATGCCCCCACCTCGCTGCTGACCTCCCCTCTGCCTCCCAGCGTGGGCATTGACTGTTTGCCACCAGGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACGCCAGACCTCCCCGCAACCGCCTCAGCCGCAGCGGCCGGGAGAGGGTGCGGGCCCGCCACCCAATCCGCTCATGGGCGCCCGACCGCCCTTTGGCATGTTCCCCAACCTCCCGCTTTTCCCGCCCGCCACCACCCAGAACATGTGCAACGCCATGAACCAGATCGCCCAGTCGGTGATGCCGGCGGCTCCGTTCAATCCTTTGGCGCTAAGCGGGGTGCGGGGCAGCACCACGTGCGGTATCTGCTACAAGACATTCCCCTGCCACTCGGCGCTAGAGATCCACTACAGGAGCCACACCAAGGAGCGGCCCTTTAAGTGCAGCATCTGCGATCGCGGCTTTACGACAAAGGGAAATCTCAAGCAACACATGTTGACCCACAAGATTCGCGATATGGAGCAGGAGACCTTCAGAAATCGTGCCGTAAAGTATATGAGTGACTTGAACGCCGATCGCGAATAA
Protein Sequence: MKNHLSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKDTGSDQEENGGCSPLTTATTTASPSRSPEPEEEHHDQDQQVSSIKEQVEKPLESLENTELESIEDNNNKVVMTKPNSEGREREHEPNASGSMPSSPVAEASAEEAATERAPEKEKDIEVDVEMGEEPSSVLPTEMRGLPGAAGAPVTLEAIQNMQMAIAQFAAKTIANGSTGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQAKQSEDEQEEEQEQEVDQDQELETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRETCSSPGETLKRRREHDLESQPSRRLSSEASIHKENHSSQDALSKLKDLENTPLPFGSDLASSIITHHDDLPEPNSLEMLQKRAQEVLDSASQGILANNMADDFAFGDKNGDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPTHSPAPPSGPFASAFPGLQNLYRPPMEILKSLGAGAPHPFFPQDLPTDLRKPSPRLEEEEGVTAVPVKKEIVEEEKDVHQQQQAEHEEEAMSQREEEQDNRNSSPEPEPLPLEVRIKEERVDDEPEQEQVHKEENRRSPSPLPQQPSPHHHRPSHLGYPPVVQPIQPPALMHPQPSPGSHLDHLPTPGQLPPREDFFADRFPLNFTTAKTLSPEHHSPVRSPAGAGVPPPGIPPPHHHPHHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGAGGPPNPNHSMHNGALGSESSQGDLEDNMDCGEDYDDDVSSEHLSNSNLDHEQNDRPRSGDDFKSLLFEQKLRIDATGVVNTNPVRPRSSASSHGGHSVGSTSAPTSPTTSSVVQKPSASPARSEASQGALDLTPRAQPASRSPLPAANKEKPVVSSPPSLPRSPSHAPTSLLTSPLPPSVGIDCLPPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQTSPQPPQPQRPGEGAGPPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCSICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSDLNADRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00580144; iTF_00488190; iTF_00539135;
90% Identity: iTF_00550436;
80% Identity: -