Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: -
Assembly: GCA_018153455.1
Location: JAECYA010000551.1:16982995-16985452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.5 1.2e+02 3.4 4.4 1 23 270 292 270 292 0.95

2 11 8.5e-08 6.3e-06 26.2 0.5 1 23 298 320 298 320 0.99

3 11 0.00028 0.021 15.2 2.1 1 23 326 349 326 349 0.97

4 11 0.2 15 6.1 3.3 1 20 355 374 355 377 0.95

5 11 0.00094 0.07 13.5 0.4 1 23 383 405 383 405 0.98

6 11 1.9e-05 0.0014 18.8 1.2 1 23 411 433 411 433 0.98

7 11 0.0063 0.47 10.9 3.6 1 23 441 464 441 464 0.97

8 11 0.014 1 9.8 0.7 2 23 471 492 470 492 0.97

9 11 0.00031 0.023 15.0 0.7 1 23 498 520 498 520 0.98

10 11 1.3e-05 0.00098 19.3 1.0 1 23 526 549 526 549 0.95

11 11 2.7e-07 2e-05 24.6 2.3 1 23 563 585 563 585 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.5	1.2e+02	3.4	4.4	1	23	270	292	270	292	0.95
2	11	8.5e-08	6.3e-06	26.2	0.5	1	23	298	320	298	320	0.99
3	11	0.00028	0.021	15.2	2.1	1	23	326	349	326	349	0.97
4	11	0.2	15	6.1	3.3	1	20	355	374	355	377	0.95
5	11	0.00094	0.07	13.5	0.4	1	23	383	405	383	405	0.98
6	11	1.9e-05	0.0014	18.8	1.2	1	23	411	433	411	433	0.98
7	11	0.0063	0.47	10.9	3.6	1	23	441	464	441	464	0.97
8	11	0.014	1	9.8	0.7	2	23	471	492	470	492	0.97
9	11	0.00031	0.023	15.0	0.7	1	23	498	520	498	520	0.98
10	11	1.3e-05	0.00098	19.3	1.0	1	23	526	549	526	549	0.95
11	11	2.7e-07	2e-05	24.6	2.3	1	23	563	585	563	585	0.98

Sequence Information

Coding Sequence: ATGCCCAGAAAGGCGCGCAAAGTTGCGGAGCCCGAAGATCTGCAGTCCTTCCTCAACAGCATCCCCCAGGAGATCGAGGGCAGCAGCAATGACAAGGTAATGGACAAAATAATGGAAGACATCGATGTGGAGGACGCTGTCCAGAATTTGATCGAAGAAGTCGAGGAAGAGGCCGTTGAAGGGGTTGAGGAAGAAGAAGAGGAGGAGTTTGATGAGGACAAGTACTTCATAGACGATGAGGGCAACTGCTACATCAAGACGACGCCAAAGATTCAGAAAGCGGTCCAGAAGAAACTCAAGGAAGCTGCGGACAAGAAGGCCAAGCTAAAACGGGCGGCAAAATCCCCGAACAAGACAATCAATCTCCGTCCTGCCACCTCGCCACCGAAAGGGAATGCCAACAAGGCAGCTCCCATCAGTGTTCGACCCGCCCGGTCGGCAACGAAAACAGCTGTGGCACCTATTAAGCAAGAAGCTGTGGAATCGAGCCGCGTAACCAGAGGCAGGGCTAAGCTGCAACCTAAAACAATAAAGGAGGAAACCACCGACCTGCAGAGGGAGCTGGAGGAGCTGGTCGATGACCCCGATATCAACAGCGTGGTAAGTCATTTGGATGACTATGCTGTGGACACTTCTGTCCTTGGTGGCATAGAGCAGCTCAACCAGGACGAGGTGTACGAGTTCGAGGATCAAGGTCCGGTACCTGAGGTGGATGACGACTCCTCGAAACAGGACGCTGTACTTACGGAGAAGCAAGTGACCCAGAAGCCGGCTAAAGTCCAAGCGAAAGGCGATAGCGGTACCACGTACACTTGCTCCAAGTGTCCCTACACCGCCAATAAGCGGTTCCTGATCACCCGCCACTGCCGCAGTCACGACGAGGAGCCCTCCTTCAAGTGCTCCATCTGCGACCGGGCCTTCCGCACCAAGGCCGGCCTGGTGAACCACATGAACACGCATACCGGCACCAAACCGCACAAATGCAAGTCCTGCGATAGCGCATTCGTGACCAGTGGCGAGCTCATCCGGCACACTCGCTACAAGCACACCAAGGAGAAGCCCCACAAGTGTTCCGAGTGCAACTACGCCAGCGTAGAGCTGACCAAGCTGCGCCGCCACATCACCTGCCATACGGGCGAGCGTCCCTACCAGTGCCCGGACTGCACCTACGCCTCCCAGGACATGTTTAAGCTAAAGCGTCACATGGTGGTCCACACGGGCGAACGGAAGTACCAGTGCGACATCTGCAAGGCGCGGTTCACGCAGTCCAACTCCCTAAAGTCTCACAAACTCATCCATACGGTGGTGGACAAGCCCTCATTCCAGTGCACCTTCTGCCCCTCCACGTGCGGCCGCAAGGCAGACCTTCGCATCCACATCAAGCACATGCACACCGCCACCAAGCCGCTCAAGTGTCGGCGCTGCGGCCAGGAGCTGCCCGATCGCTATCAGTACAAGCTGCACGTGAAGTCGCACGAGGGCGAGAAGTGTTACCGCTGCGAGCTCTGTCCATACGCCTCGGTGACCAAGCGGCATCTGGACTCACACATGCTCGTCCATCTGGACGAGAAGCCCTTCACTTGCGATCTGTGTCCGCAGACATTCCGCCAGCGACAGCTGCTGCGCCGTCACGTGAACCTCATGCACAATGACAACTACGAGCCGCCGAAGCCTCGCGAGAAAGTCCACCAATGTCCGAGTTGCCCCCGGACCTTCACCCACAAAGGGAATCTGATTCGGCACATGGAGGTGCACGACGACTCGGTGAATGCTCGCGAGCAGAAGAAGCTCCTGAAACAGGGCAGAGATCTGCGCATCCTTCCGGATGGCAAACTAATTGATCTCAAGGATGACAACGCACTGGCTGACGACAGGGAGGAAGAGTGCTACGACCTGGCGGACATCGAGCCAGATGAGGAGGAGCTCGTCCCAGAGCCAGAGCCGGTAACAAGGAAGACCGTTCCAAGGTCCCAGCCGGTGATAATCAACAAGCATGCCATGAAATCGGGTACTTACAGCAAGAAACCCGTGATTATAAACAAGCAACTGCGCTCGCAGAGCAAGACCAACACGTTCCACATCAAGGAGGAGCAGGATACCTCGGACTTTACGGTGCAACTGCAGGACGACGACGGCCAGGTGATGGTGGTGGAGTTGATAAATGGCGCCGAGGAGGTGGTGGTGAAGCGAGAGCCAGGTGGAAACACAAACATCAGTGCCTCCAACTGCTTCGGCTTTGAGGAGGATGGCGAGTTCGAGGAGTACATAGATCAGGATAACGAGGTGGAGGCCGAGTCGCAGGAGTTTCTGCAGCTGATGGACATGATAGAGCAGGATGTTTAG
Protein Sequence: MPRKARKVAEPEDLQSFLNSIPQEIEGSSNDKVMDKIMEDIDVEDAVQNLIEEVEEEAVEGVEEEEEEEFDEDKYFIDDEGNCYIKTTPKIQKAVQKKLKEAADKKAKLKRAAKSPNKTINLRPATSPPKGNANKAAPISVRPARSATKTAVAPIKQEAVESSRVTRGRAKLQPKTIKEETTDLQRELEELVDDPDINSVVSHLDDYAVDTSVLGGIEQLNQDEVYEFEDQGPVPEVDDDSSKQDAVLTEKQVTQKPAKVQAKGDSGTTYTCSKCPYTANKRFLITRHCRSHDEEPSFKCSICDRAFRTKAGLVNHMNTHTGTKPHKCKSCDSAFVTSGELIRHTRYKHTKEKPHKCSECNYASVELTKLRRHITCHTGERPYQCPDCTYASQDMFKLKRHMVVHTGERKYQCDICKARFTQSNSLKSHKLIHTVVDKPSFQCTFCPSTCGRKADLRIHIKHMHTATKPLKCRRCGQELPDRYQYKLHVKSHEGEKCYRCELCPYASVTKRHLDSHMLVHLDEKPFTCDLCPQTFRQRQLLRRHVNLMHNDNYEPPKPREKVHQCPSCPRTFTHKGNLIRHMEVHDDSVNAREQKKLLKQGRDLRILPDGKLIDLKDDNALADDREEECYDLADIEPDEEELVPEPEPVTRKTVPRSQPVIINKHAMKSGTYSKKPVIINKQLRSQSKTNTFHIKEEQDTSDFTVQLQDDDGQVMVVELINGAEEVVVKREPGGNTNISASNCFGFEEDGEFEEYIDQDNEVEAESQEFLQLMDMIEQDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00550409;
90% Identity: iTF_00539113;
80% Identity: -