Dosh000759.1
Basic Information
- Insect
- Drosophila oshimai
- Gene Symbol
- srp
- Assembly
- GCA_018150695.1
- Location
- JAECWM010000213.1:1318187-1327742[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 5.1e+03 -2.8 0.3 1 6 252 257 252 260 0.76 2 2 3.3e-19 1.2e-15 56.8 1.9 1 35 345 378 345 379 0.97
Sequence Information
- Coding Sequence
- ATGACCAAGACCACCAAACCCAAGGGGGAGAAGGGGGCCAAAGCGGGCGGCACCCGACCTCTCTACGAGCACTACGCCAGCACGGATCCCATAATGCGGAACAACTTTGCGCTGTACAGCGTGTACGCTGGGGGCGGCGGCGGAGTGGGCGTGGGAATGACCAGTCACGAGCACCTGGCAGCGGCCCAGGCGGCGGCGGCAGCAGCGGCCCAGAACTCCACGCCCAACATCGACGAGGTGATCCAGGACACGCTGAAGGACGAGTGCTTCGATGACGGGCACAGCAGCAACTACCACGTACTGACCTCGAGCTTCACCCAGCTGACCAGCGCCGCCCACCGCGACAGCCTCTCCCCGGATCACGGCGGCTACTTTGGGGCGACACAGCTTAGCCCCAGCTTGCAGAACAGCTCTGTTTATGCTGGCAGCGGCTATGTAAGCGGCGTGGCCAATGGCTCGGTCAGTGGCGCCGAACGCTACGCTCCGATGGCCAATTACCGCGGTCAGAACGAAGCCTGGTTCGAGCCAATCAGTTACACCTCCGCAGCATCCGGCCAGAGCCAGTTGGGTGTTGGTGCCGGTGTGGTCACCAATGTGATACGGAACGGGCGGGCCATCTCGGCGGCCAATGCAGCTGCAGCAGCCGCCGTGGACGGATCCTCCGGACGCGTAGATCCTGGCTCCTTTCTGTCCGCCTCGGCATCGCTGACAGCAACATTTCTCGATGCCGATTATTTCACTGAGGGGCGAGAGTGTGTCAATTGTGTGGCCGCTGAATCAGGCGGGGATTTCTATAAGACCTACTCATATAATGTGGCCGGCAATGGCCGTAGTAAGCCCAGCACGAGTGCCGCCAGCTCGCAAGCCTCTGCGTCCTGTCCAGGTGTCTTAGGTGCAACCTCGGCGACTGCATCTGCGGCGTCTGCGGGAGCGGGAACGGGATCGGGAGCGACGGCGGCGACGACGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGCCTCGAAGCGAGCCGGATTGTCCTGCTCCAACTGCCTCACCACCTATACGTCGCTGTGGCGCCGCAATCCCGCCGGAGAGCCCGTCTGCAATGCCTGCGGGCTATACTTTAAGCTCCACAGCGTGGCAAGACCGCTGACTATGAAAAAGGACACCATTCAGAAACGCAAGCGCAAGCCGAAGGGCACCAAAAGCGAAAAGTCCAAGAAGATGAAGACGGCCTTAAACGCCACCTTGGAGAGCGGCTCCTTGGCGGCCAGTTGCCACAACGTTGGCCTGGGTCTGGACAGCAGCCAGATGGGACACGAACAGCATGTGGCCAACTACAGCATGCAGCATAAGTTCGGGGTGGAGCGGGAAACGGTGGTGAAGATGGAGTAG
- Protein Sequence
- MTKTTKPKGEKGAKAGGTRPLYEHYASTDPIMRNNFALYSVYAGGGGGVGVGMTSHEHLAAAQAAAAAAAQNSTPNIDEVIQDTLKDECFDDGHSSNYHVLTSSFTQLTSAAHRDSLSPDHGGYFGATQLSPSLQNSSVYAGSGYVSGVANGSVSGAERYAPMANYRGQNEAWFEPISYTSAASGQSQLGVGAGVVTNVIRNGRAISAANAAAAAAVDGSSGRVDPGSFLSASASLTATFLDADYFTEGRECVNCVAAESGGDFYKTYSYNVAGNGRSKPSTSAASSQASASCPGVLGATSATASAASAGAGTGSGATAATTLDEHVSRANSRRLSASKRAGLSCSNCLTTYTSLWRRNPAGEPVCNACGLYFKLHSVARPLTMKKDTIQKRKRKPKGTKSEKSKKMKTALNATLESGSLAASCHNVGLGLDSSQMGHEQHVANYSMQHKFGVERETVVKME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -