Basic Information

Insect: Drosophila ochracea
Gene Symbol: -
Assembly: GCA_035044125.1
Location: JAWNML010000059.1:9056498-9069620[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8 1.8e+02 2.8 2.3 3 23 307 329 305 329 0.92

2 15 1.1 66 4.2 0.7 3 21 470 488 468 492 0.91

3 15 0.03 1.9 9.0 0.2 2 23 514 536 513 536 0.94

4 15 0.049 3.1 8.3 0.6 1 23 553 576 553 576 0.95

5 15 0.72 45 4.7 0.2 1 21 581 601 581 605 0.90

6 15 0.0071 0.45 11.0 0.1 2 23 664 686 663 686 0.95

7 15 0.71 45 4.7 0.2 1 21 691 711 691 711 0.92

8 15 3 1.9e+02 2.7 0.3 3 23 739 759 737 759 0.92

9 15 0.013 0.84 10.1 1.6 2 23 772 792 771 792 0.91

10 15 4.2e-05 0.0026 18.0 1.0 1 23 798 821 798 821 0.97

11 15 0.00029 0.019 15.3 0.4 1 23 847 869 847 869 0.98

12 15 1.2 77 4.0 0.4 1 23 876 900 876 900 0.95

13 15 0.52 33 5.1 5.9 1 23 905 929 905 929 0.97

14 15 0.0018 0.11 12.9 2.2 2 23 943 964 942 964 0.96

15 15 0.0013 0.081 13.3 3.4 1 20 970 989 970 991 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8	1.8e+02	2.8	2.3	3	23	307	329	305	329	0.92
2	15	1.1	66	4.2	0.7	3	21	470	488	468	492	0.91
3	15	0.03	1.9	9.0	0.2	2	23	514	536	513	536	0.94
4	15	0.049	3.1	8.3	0.6	1	23	553	576	553	576	0.95
5	15	0.72	45	4.7	0.2	1	21	581	601	581	605	0.90
6	15	0.0071	0.45	11.0	0.1	2	23	664	686	663	686	0.95
7	15	0.71	45	4.7	0.2	1	21	691	711	691	711	0.92
8	15	3	1.9e+02	2.7	0.3	3	23	739	759	737	759	0.92
9	15	0.013	0.84	10.1	1.6	2	23	772	792	771	792	0.91
10	15	4.2e-05	0.0026	18.0	1.0	1	23	798	821	798	821	0.97
11	15	0.00029	0.019	15.3	0.4	1	23	847	869	847	869	0.98
12	15	1.2	77	4.0	0.4	1	23	876	900	876	900	0.95
13	15	0.52	33	5.1	5.9	1	23	905	929	905	929	0.97
14	15	0.0018	0.11	12.9	2.2	2	23	943	964	942	964	0.96
15	15	0.0013	0.081	13.3	3.4	1	20	970	989	970	991	0.95

Sequence Information

Coding Sequence: ATGAACAGCGAGTCGACAGATTTGGACGACACGCATTTGTGCATCAAGTGCAATGCTACAATTGTGGGTCTGAGCAAGTATATTGAGCACCGTAAACGGAGTTGCCTCAGCACTGGCGGCAATGAGCACCTGTCGAAGCAGGTGGTGACTCCGACAACGACGTCGGCTGCCACCGAACAAGTATCGCACTCAGGCATGCGTCGCAGCCACTTGGACCACACCTATGACGGCTTCCACTTTACAGAGCCGGAGGCACCCAGCAGTTATCTGCGCAAAACGGCCTCCAGTCATGGCGGAAAAACCTCCAAGTCCCTAACGGATTCCTATGATCCGACGTACGAGCTGGGTGCCGATCTGTTCTTCTcatcgctgcagctgcaaagtGTCTCAACTGGCGGCAAGACAGGTGCGCGGCCGGAGCGTGGCGCTAAGGAGGAGCAGAGCTGGCATACGTCCAGCAACTGCTCCGATCCGCTACTGAAATTGGTCCGGGAACACGAAGTAACCCACTTTAAGTCACTCAAATTTGTGCACTCGCCAGAGGCAAGTGAGGAggaagacgacgacgaggactTCGagggcgatgatgatgagcatgAGCATGAACATGAACATGAACATGAAAATGATCCCGATCCCGATCCCGAGCCTGATGAGGATTACGATGGGCGTCGCCATTCGCCGCCGACGGTGCCAGCCACGCACACTGGTGGCAAATGGAAGCCAGAGCACCGTCCGCAAATGCAACACACTCACCTCGAGCGCATCTCGCCCAGCTGGGATGAGCCGCCCGAGGACCAACACGATCATCCGCCGGCGGAGCACACGCACGGCAAATGGGTGCCGGGCAGCAAGCAGCTGGAGTATCGCGAGAACATCGATCTGACTAAGTTGCAGCAGCCAGGCGCCAGCTACTGGTGCAACATCTGCTGTCGCCGCCTCAAGACGCGCCTCAACTACGAGCAGCATCTGCGCAGCGCCTACCATCAGCGACGTGCCGATGCCGAGCGCCAACTGGAGCAGGCCAATCTCGCAAGCGCCAATCTAACACTAACCACCAAGGACTTCCCACAGATGCCGCCGACGGAGCAGCTGCCGcggcgtcgccgtcgtcgtgcCCACTTTCTGCGCTGCGATCTGTGCCGGCATAGCATGGCCCGTCATCTGATGGGCAAGCATCTCATCTCGCACTATCACTATCgccggctgcagcagcagcaagcgaaCCAACTGCGCCGACAGAGCGCCCTGCATGACATCCTGGAGCACATGGGCAGCATTGTTAGACAGGCGCCATTCCAGTGTCTGCCCTGTCGCTTCTATGCCAACACTGAGCAATCTTTTCAGCTCCATTGGCGCTCCTCGACGCACGTGACGCTGACGGAGCGACTTGGTGGCAGCTTCTGGTGCAGCTACTGCCAGTTCGAGTGTGCCAGCAATGAGGAGAtgtggcaacatttgctgGGCTCCACGCACAAGGAGGTGCTCTTTGCGATCAATCGTTCGGTGCCCGTTTGCATTGCCCAGCGTCGTCCACTGAACTGTTCCGGCTGCAGCGCCAGTTTCCTGTACAATGCGCAGCTGCGTCGTCACCTCGCCTCGGAGCATGTGGAATTGGTGGCAGCGGGCAGCGCTGCCGATGATTATCAGTGTCGCTTTCGCTGTGGCATTTGTGGCGTTGCACAGAGATCTCGAGTGGCGCTGCAGCGGCACGAGAAGCACCAGCATCGATTGGCCAAATACTATTGTGCCGTTTGTCGGCTGGAGTTCGAGACGCCGCTGGAGGCGCGACGCCATCGCAGCCTGATGCAGCACAAGCGGCGAGCTTGCCGCCAACTGAGccgcaaatgcagcagcagcagcagcaacaataatcagCCGGATTGTGAGATTCAACACATGCTGCATGAGGTGCTGGAggaacagcagccagcagcagcaggagaacAGCCATCAGCTCTCAGTTCCAAGAGGCGACGCCTAACCAGCCAGTGTGTCAGCTGTCCGCTCAGCTTTGAGACGCCTCAGGCACTCGTCCAGCATCGTCGCGAATTGCATCCGGTGGACAATCATGCCTGTCTCAGCTGTGGGAGTAGCTTTCAATCCGCCCAGGCTCTGGGAAGACACACACGCTGCTGCCAGCCCACAGCGTCCACCTcgacagctgttgctgctcctgctccagctgcaaCATCTGAATCAAAGTCCTGGAACTGTGCGCAGTGCAGTTTCACAGCTAAATATGAATCGGATTTGCTTTATCATCGCATCTTTCACACGCACGGCTCGGCAATTGAAAAGAATGAGCTGCTCCAGTGTCCGCTGTGCCCCAAACAGTTTCGCAAGCACTCACTGCTTCCCCATCTGCGCAACCATACGGACGAAAGGATCTTCGAGTGCGTCGAGTGCTCGGCCAAGTTTGCCCGCAGACACAACCTCAAGAATCACATCGCAACAATGCATGGCCAAAAGAAGAAACCATCGCCAGCTGCGGATAAGTCAGCTGTCCAGCAATCGAGTGTGGTTGCAAAGCAGAAATATCAATGTGGCACCTGTGGCAAAATACTGGCTAAAAAATACTCACTGAAACTACACGAAATGAGCCACGCAGAGGTGGAGCGTCAGCATCGTTGCCACATCGAGGATTGTCAATATGCTGGTCTCACACCGGAGGCACTCAAAATCCATCTAATCTCACATGCGAATGGAAGTCACAAATGTGAACACGACAACTGTCAATATGTGGGCAAAAGTGAGCTGCACTTGAAGAGGCACCTCAAGTCGCATGTGCCCGAAAAGGAGCTGATCGAGGATGGCAAATGGTTGCCGTGCGATCAGTGCGAGTTCAGGACCCGCATCAGGGGACATCTGAGGCGGCACATGCGTAGCCACACTGGCGAGAAACCCCATCAGTGTCCGCACTGTGACTTCCAGTGCAGCAGCATGGATAATCTGCGCAAGCACATCGTCAAAACGGGCAAGCATCCGGGCAAGTTCATCTACGAGTGTTCGTCCTGCGACACCTTCAAGAGCAACAGTTTCAAGGATCACCGACTACATTTGGCTacgcataaaaataaattgtccTAA
Protein Sequence: MNSESTDLDDTHLCIKCNATIVGLSKYIEHRKRSCLSTGGNEHLSKQVVTPTTTSAATEQVSHSGMRRSHLDHTYDGFHFTEPEAPSSYLRKTASSHGGKTSKSLTDSYDPTYELGADLFFSSLQLQSVSTGGKTGARPERGAKEEQSWHTSSNCSDPLLKLVREHEVTHFKSLKFVHSPEASEEEDDDEDFEGDDDEHEHEHEHEHENDPDPDPEPDEDYDGRRHSPPTVPATHTGGKWKPEHRPQMQHTHLERISPSWDEPPEDQHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPGASYWCNICCRRLKTRLNYEQHLRSAYHQRRADAERQLEQANLASANLTLTTKDFPQMPPTEQLPRRRRRRAHFLRCDLCRHSMARHLMGKHLISHYHYRRLQQQQANQLRRQSALHDILEHMGSIVRQAPFQCLPCRFYANTEQSFQLHWRSSTHVTLTERLGGSFWCSYCQFECASNEEMWQHLLGSTHKEVLFAINRSVPVCIAQRRPLNCSGCSASFLYNAQLRRHLASEHVELVAAGSAADDYQCRFRCGICGVAQRSRVALQRHEKHQHRLAKYYCAVCRLEFETPLEARRHRSLMQHKRRACRQLSRKCSSSSSNNNQPDCEIQHMLHEVLEEQQPAAAGEQPSALSSKRRRLTSQCVSCPLSFETPQALVQHRRELHPVDNHACLSCGSSFQSAQALGRHTRCCQPTASTSTAVAAPAPAATSESKSWNCAQCSFTAKYESDLLYHRIFHTHGSAIEKNELLQCPLCPKQFRKHSLLPHLRNHTDERIFECVECSAKFARRHNLKNHIATMHGQKKKPSPAADKSAVQQSSVVAKQKYQCGTCGKILAKKYSLKLHEMSHAEVERQHRCHIEDCQYAGLTPEALKIHLISHANGSHKCEHDNCQYVGKSELHLKRHLKSHVPEKELIEDGKWLPCDQCEFRTRIRGHLRRHMRSHTGEKPHQCPHCDFQCSSMDNLRKHIVKTGKHPGKFIYECSSCDTFKSNSFKDHRLHLATHKNKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00528388;
90% Identity: iTF_00482583;
80% Identity: -