Basic Information

Insect: Drosophila ochracea
Gene Symbol: -
Assembly: GCA_035044125.1
Location: JAWNML010000058.1:1482690-1485368[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.1 2e+02 2.7 2.6 2 23 334 356 333 356 0.95

2 9 0.0057 0.36 11.3 0.5 3 23 414 435 412 435 0.94

3 9 0.00015 0.0094 16.3 0.2 1 21 472 492 472 493 0.96

4 9 0.55 35 5.0 3.5 3 23 502 523 500 523 0.94

5 9 3.2e-05 0.002 18.4 1.8 1 23 529 551 529 551 0.98

6 9 0.0043 0.27 11.7 0.5 1 23 556 579 556 579 0.96

7 9 0.12 7.5 7.1 0.6 2 23 587 609 586 609 0.95

8 9 0.56 35 5.0 1.2 2 23 616 637 615 637 0.94

9 9 0.0015 0.095 13.1 1.5 1 23 642 665 642 665 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.1	2e+02	2.7	2.6	2	23	334	356	333	356	0.95
2	9	0.0057	0.36	11.3	0.5	3	23	414	435	412	435	0.94
3	9	0.00015	0.0094	16.3	0.2	1	21	472	492	472	493	0.96
4	9	0.55	35	5.0	3.5	3	23	502	523	500	523	0.94
5	9	3.2e-05	0.002	18.4	1.8	1	23	529	551	529	551	0.98
6	9	0.0043	0.27	11.7	0.5	1	23	556	579	556	579	0.96
7	9	0.12	7.5	7.1	0.6	2	23	587	609	586	609	0.95
8	9	0.56	35	5.0	1.2	2	23	616	637	615	637	0.94
9	9	0.0015	0.095	13.1	1.5	1	23	642	665	642	665	0.97

Sequence Information

Coding Sequence: ATGGCCGCCGCAGCGGATGCTGCAAAATCGAACGCGTTGCTCGCGACGAACAAAGCcaataatacaaaatgccGCGCTTGCCTCGCCGTCGGTCGCCAGACGGTCAAAGTGGATGCCAAAATACCGGGACTGAAGACCGTGCGCACTTACGGCCAGGGATTGCGCCAGTGCACGAATATACCGTTAACCGCTCGATCCGCCGGCGGCTACAGGTGGCCCATGCAGATCTGTTTGCGCTGCTGTCGCGCCCTCGAGGTGGCCATGCATTTTGTGGAACTGGCACTGGAATCGAATCGGAAATTGTTTGCTGAATCGCAAAATCTCAAGTCgttgacgacgatgacgatgacactGACGAGTGCTTCGGGTGAGCTGAAGCGCAAGGCGAGTGGCAGCAGTGAGTTGTTGCATTGGAATCAATTCAGTCAAGAGTTTGAGCAATTTGTGGAGAGTTACGATGGGATCACAGCGCCCATCGAGGAGAACGTGCTGTATATGCGGGGTGCCAAGGTGCCGCGCCTCGATGCGGACATAGCGCCCAACAGGCAGCCACCCGAGGAAGATGATGTCATCTTATTTGATGTAAAGTATGAGAGCAATGATCAGGATCAGGAGGATGAGAACGATGGCTCCGATGCGAAGAATAGTGAAACCTTCTATGACACTAGTATTATGAATGAGAGCAACCAATCCGTCGCAGCTGGCATTAATAGCAGCgccgagaacaacaacaattataattttaataacaagaaTGGGGATGTTGAGGGCGATCTCATCCAGCGTGCCCTCTTCATGACGCTCAACGATGAtgctaacagcagcagcagccaaacaacaacgCACGATTTACAATCCATTGAGTCCATCGAAGCcacattattaaaatCTacggagcaggagcagctggcAGGGACAAGTGGCAGCAGCTTGAGGAGTAGTTTGAccagcaaatcaaatcagcCCAGCAGAGAGATCAATGTCCAGATACCGTTGCTCAGCTGCAGCATGTGCAAACAGACGCACACGGAGGCCAAACAGATGAGGACACACTATATGCGTGCCCACAGCTGTGATGTGCCCGAGGATGATATCATTGGCCTGACCAAAAatcAAAGCTTTAAGTGTCGTCCATGCAATGATTATGTGACAAACAGTCGCACGGATATGCAACAGCATCTGATTGAGCATCACAAAATTGATGGGGATTTTGAAATGTATTGTTATGTGCAGCAGAATTGTCCCGCCTGTGGGCGCATCTTCAAGGATCAGCGCTCGGCACGCACGCACTACACACGCATGCACacaccacaacagcaacaacaacagcagcaacaacagcagcttcagcaacaaaaaccgcaacagttgcagccACAATCTGGCAATTCAGTtgaacagcagccgcaacaattTGTGTGTACCGCCTGCGATAAGGTATTCAATTTAAAGGGCAGCTTGCAGGCGCATCAACGTTTCTGCCAGGTGAAGCAGCCGGTGCACTGCACCTTCTGCAAGCAGCAGTTTAGCAGCATGCGGAAATACGAGttgcacttgcaacagcagcacgcTGTGGACACGTTGCACGAATGCGAGATATGCCTGAAGAATTTCAAGAATAGCGATTCGCTGGCAGTGCATCGCAAGCGGCACTCGGAGCGACATTTTCACTGCGACAAGTGTTCGTTGAATTACATCAATGCGGCGGAGTTGCGGGTGCACTATGAGCGTGCCCATGTCCACGAGGAGCAGGTGGTCACCTGTCGCAGCTGTGACAGCACATTTCAGAATTATGCCCTGCTTCGCGAACACGAACAGCGCTCGCATCAAAAACTCAAGATTTGGCGCTGCGACAGTTGCAGTTTCGAGACGAAATCGCGCGCTCGACTGCGTCAACATCAGTACGAACACATGGACTATCCGTACAAGTGCCAGCACTGTCCCGAGGAGTTTGCCGATCGCGGCAAAATCCGTCAACATTCCAAGAAGGTGCACTCGGTGGAGCTGAGCGATGAGCAGCTGGCCGATATGTTTCGGGAACGCATCGGCTATACCAATCGCCATGATGCGTTCAGCAAGATAAACACCTCCCTGGAGATACCCGGTTTCAGTGATGATTGCTTTACGGAGCTGAAGAGTCTGGGCCTCGACTATGATGATATAACAACCGATCTCTTCTCGAATTCCATTAGTGCACTGGACACTCTGCTCGAATTGGTACCCTGA
Protein Sequence: MAAAADAAKSNALLATNKANNTKCRACLAVGRQTVKVDAKIPGLKTVRTYGQGLRQCTNIPLTARSAGGYRWPMQICLRCCRALEVAMHFVELALESNRKLFAESQNLKSLTTMTMTLTSASGELKRKASGSSELLHWNQFSQEFEQFVESYDGITAPIEENVLYMRGAKVPRLDADIAPNRQPPEEDDVILFDVKYESNDQDQEDENDGSDAKNSETFYDTSIMNESNQSVAAGINSSAENNNNYNFNNKNGDVEGDLIQRALFMTLNDDANSSSSQTTTHDLQSIESIEATLLKSTEQEQLAGTSGSSLRSSLTSKSNQPSREINVQIPLLSCSMCKQTHTEAKQMRTHYMRAHSCDVPEDDIIGLTKNQSFKCRPCNDYVTNSRTDMQQHLIEHHKIDGDFEMYCYVQQNCPACGRIFKDQRSARTHYTRMHTPQQQQQQQQQQQLQQQKPQQLQPQSGNSVEQQPQQFVCTACDKVFNLKGSLQAHQRFCQVKQPVHCTFCKQQFSSMRKYELHLQQQHAVDTLHECEICLKNFKNSDSLAVHRKRHSERHFHCDKCSLNYINAAELRVHYERAHVHEEQVVTCRSCDSTFQNYALLREHEQRSHQKLKIWRCDSCSFETKSRARLRQHQYEHMDYPYKCQHCPEEFADRGKIRQHSKKVHSVELSDEQLADMFRERIGYTNRHDAFSKINTSLEIPGFSDDCFTELKSLGLDYDDITTDLFSNSISALDTLLELVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560615;
90% Identity: iTF_00525464;
80% Identity: -