Basic Information

Insect: Drosophila ochracea
Gene Symbol: BCL11B
Assembly: GCA_035044125.1
Location: JAWNML010000034.1:1376361-1378068[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00017 0.01 16.1 0.5 1 23 214 237 214 237 0.96

2 8 3.8e-05 0.0024 18.2 1.1 2 23 259 281 258 281 0.92

3 8 0.00013 0.0083 16.4 0.3 2 23 308 328 308 328 0.97

4 8 1.5e-05 0.00093 19.4 0.4 1 23 334 356 334 356 0.98

5 8 8.7e-06 0.00055 20.2 0.9 2 23 363 384 362 384 0.97

6 8 9.9e-08 6.2e-06 26.3 1.0 1 23 390 412 390 412 0.98

7 8 0.042 2.6 8.6 1.1 1 21 418 438 418 442 0.87

8 8 0.019 1.2 9.6 0.1 1 23 492 516 492 516 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00017	0.01	16.1	0.5	1	23	214	237	214	237	0.96
2	8	3.8e-05	0.0024	18.2	1.1	2	23	259	281	258	281	0.92
3	8	0.00013	0.0083	16.4	0.3	2	23	308	328	308	328	0.97
4	8	1.5e-05	0.00093	19.4	0.4	1	23	334	356	334	356	0.98
5	8	8.7e-06	0.00055	20.2	0.9	2	23	363	384	362	384	0.97
6	8	9.9e-08	6.2e-06	26.3	1.0	1	23	390	412	390	412	0.98
7	8	0.042	2.6	8.6	1.1	1	21	418	438	418	442	0.87
8	8	0.019	1.2	9.6	0.1	1	23	492	516	492	516	0.91

Sequence Information

Coding Sequence: ATGGAAAGTATCGAGGAAGAGATTGAGCCACCAGACCAAGTCAATGCGCAGACTTGTCGCGTTTGCCTGGAGTCCCACGAAACCACATTATGCCTTCGCGATGAAATTGAGTTTAACGACCTGAACTTCgagctgtggcagctgttggAGAACGTATCCAATGTGAAgTGCAACTGGAATGAACCGAATCTACCCACACAGCTGTGCCAGAGCTGCACGCGTCGCCTGATCAGTGCCTATGAGTTTATACGCGACGTCGAAAAGTCCAATGAGACGCTACAGGTATTGTGCAGCCATCTGGAGCGGGAGCAATCAGCTGTAACCGttgtgaatgtggatgtggacgAGTATGAGGAACTAGTTCAAGAGGAAGATCATTTCGTGCAGTTGGATAAATGCGAATCCGTCATTGAACTACatgaggaagaggaggaggaggcggaagtggaagtggagaCGGAGCTGGTACACTCAGAAGAAACACCATGTGAGGAAAATCCCCTGCTGAACAATAGCAATGACGAACCGAGCGAACTTGTACAAGAAGAATCCGATGCAGAGATAAGTGTTGAGCCCGATCTTTTGGAAGAGCGACCCTCACAGCTGGGCATGCGACTGGCACACTCCCAAAActatatgtacaaatgtgcAAGTTGTCCACGGAtctttgctaaaaataaatcgctGACTCGCCACTTTGCCACCGCACACAGGCAAGCGGCAAATGTTGCTGCCCAGGAGCTGGCCAGggagcacagcagcagcggcgcccTCATCTGCGAACACTGTCCGCGATTATTCAAGCGTCAGGACACACTGCGTCGCCATCTGATTGCATTTCATCCGGAGGTGGCCGCCGCCAGTGGCGATGCCGACGATGTTGCCAGGAGTGTGCCGCCCAAGCGTGCTGCCAAGCGTCGTGAGTGCCCCCATTGTGGCATTAGCTTTCCCGTCTCCAGCCTAACTATACACATACGACGGCATACCGGCGATAATCCGTACAAGTGCGACGTATGCGACAAGGCATTTCCACGCGGCCAGGATCTGAATCTGCACAAGCGCCAGCATACCGGCGAGCGTCCGAGCGAATGCAAAATCTGCGCCAAGAAATTCATTTCGCAAAACAAACTGGCGCGCCACATGCGCCTCCACACGGGCCATCGTCCCTACGCCTGTGACAAGTGCGACAAGAGATTTGTGCAGTCCAACGATCTGAAGATTCACATGCGACGGCACACGGGCGAACGACCCTACGCCTGTGGTGTTTGCGACAAGAGTTTTGTGTGCGGCTCCCTCTTGAACATTCATCGCAACCAGAAGCGACACCATGAGACTGGGCGGGAGGGCGTGGATTACCTCGATCCTGTTGATCCCTATGAGAACAGTCGCGTGAACAAGCGACGTGCCGAGGACATTGAACGGATGCGACTGCGACGGGAAGGCGAATCGCTGCCACCCATTTTGCTGCGTCCCTACAACTGTGGTATCTGCGGGGATAACTTTAAGAGTGGCGCCTTGCTCACGATTCATCGCAATAAAATGGCCCACTATGAGATCAGCAAGGTGGACTACGGTGATCCCTACGAGCAGCGatacaagcagcagcagcaacaaccaagaACAGCGCAAAGCGAGGATTAA
Protein Sequence: MESIEEEIEPPDQVNAQTCRVCLESHETTLCLRDEIEFNDLNFELWQLLENVSNVKCNWNEPNLPTQLCQSCTRRLISAYEFIRDVEKSNETLQVLCSHLEREQSAVTVVNVDVDEYEELVQEEDHFVQLDKCESVIELHEEEEEEAEVEVETELVHSEETPCEENPLLNNSNDEPSELVQEESDAEISVEPDLLEERPSQLGMRLAHSQNYMYKCASCPRIFAKNKSLTRHFATAHRQAANVAAQELAREHSSSGALICEHCPRLFKRQDTLRRHLIAFHPEVAAASGDADDVARSVPPKRAAKRRECPHCGISFPVSSLTIHIRRHTGDNPYKCDVCDKAFPRGQDLNLHKRQHTGERPSECKICAKKFISQNKLARHMRLHTGHRPYACDKCDKRFVQSNDLKIHMRRHTGERPYACGVCDKSFVCGSLLNIHRNQKRHHETGREGVDYLDPVDPYENSRVNKRRAEDIERMRLRREGESLPPILLRPYNCGICGDNFKSGALLTIHRNKMAHYEISKVDYGDPYEQRYKQQQQQPRTAQSED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01320633;
90% Identity: iTF_00522393;
80% Identity: -