Basic Information

Insect: Drosophila ochracea
Gene Symbol: salm
Assembly: GCA_035044125.1
Location: JAWNML010000061.1:3427477-3435362[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.5e-06 0.00016 21.9 1.7 1 23 367 389 367 389 0.98

2 8 3.5e-05 0.0022 18.3 3.5 1 23 395 417 395 417 0.98

3 8 2.4 1.5e+02 3.0 2.4 5 23 674 692 671 692 0.84

4 8 3.6e-08 2.3e-06 27.6 0.2 1 23 698 720 698 720 0.98

5 8 0.0011 0.069 13.5 0.9 1 23 730 752 730 752 0.98

6 8 0.055 3.5 8.2 0.1 2 23 968 990 968 990 0.96

7 8 1.2e-05 0.00075 19.7 5.0 1 23 1135 1157 1135 1157 0.96

8 8 9.4e-08 5.9e-06 26.3 0.7 1 23 1163 1185 1163 1185 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.5e-06	0.00016	21.9	1.7	1	23	367	389	367	389	0.98
2	8	3.5e-05	0.0022	18.3	3.5	1	23	395	417	395	417	0.98
3	8	2.4	1.5e+02	3.0	2.4	5	23	674	692	671	692	0.84
4	8	3.6e-08	2.3e-06	27.6	0.2	1	23	698	720	698	720	0.98
5	8	0.0011	0.069	13.5	0.9	1	23	730	752	730	752	0.98
6	8	0.055	3.5	8.2	0.1	2	23	968	990	968	990	0.96
7	8	1.2e-05	0.00075	19.7	5.0	1	23	1135	1157	1135	1157	0.96
8	8	9.4e-08	5.9e-06	26.3	0.7	1	23	1163	1185	1163	1185	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATATTTCGCAATCGCATCAATTATCGGGGCACAGGAGCACGCACTGGCACCTCCAATGGCAGTGGAGGAGGCGCAGGTGGCGGTGGAGGAGGcggaggcagcaacagcagcagctcagatCCAATTGGCGAACGGGAGAGTCTCCTGGCCAAGGAACTGAATGCggacagcaataacaatgcgGCGGATGAGACAATCGAGCCGGAATTGGAGatggagctgcagctggagaaggagaaggagaagcaaTCGGAGACATCACTGCCCAGCTCCGATCAGCCAGAGAATAGCAATGAGGCATTGGATCTCTCGGTCATCTCGGGCAATCGGTTGCCCAACAGTGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCTCAGTTTGCGGCCACGGCGCTGGCGGCGGCATCCACAGATCCCAGTGATCTGGCCATGGTGCAGTCGACCATCTTCAATGTGCAGCGACAGCATctgatgcagctgcagctcatcCAGCATCTACAGAGTCAATTGAAGCGAGCGGGGGGCGTGGTCGCCGCCCTCAGCCGACAGGGTCAAAACTATGCCGAGCAGGATGACGATGAAGCGGGAGAGGAGGCCGAAGATGTGGAGGAGTTGGAAGAGGAGCAGCAACTGTCGATGCCATCCAAAGAGCCGTCGCGAGTGAACGGTGAGCGAACCGAATTGGATCATGCAAGGCTGGAGGAGAGTTCAAAGACTGATGACGAGTGCAATAGGCTGGGCGGGAGACCAAGGCGCGCCTTGGCCAGGGAAAGATCGCGGGAGACGACGAAGACGGAGGCGGAGGCCGATGCTGAAGCCGAAGGCGAACACGAGCTGGCCGAGAGCGAGTACAAGCCACTGATGTGCGACATTAGCTCCAGTCTGGCGTCCAGCATCATCACCAATCATGATCCGCCGCCGGCGCCCAATGAGCCCAACTGCCTGGAGATGCTGCAGCGTCGCACCGAGGAGGTGCTGGACTCTGCATCACAGAGTCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAATATGCCTCCAAGGAGGCGCAAAGTCGCGGTGAGATCTTCAAGCATCGCTGCAAATATTGTGGCAAAATCTTCGGCAGCTATTCAGCCCTGCAAATCCATTTGCGTTCGCACACGGGCGAACGACCCTTCCACTGCAATGTTTGCGGCAGCAAGTTCACCACCAAGGGCAATCTCAAGGTGCACTATCAGCGGCACACGCAGATCTTTCCGCCCATGCTGATGCCACCCGTGGTCAACGGGGTCAATGCACCCGAGCAGTTTGCTGCCATTCGGTTGCCGTTTGTGACACCACCagtggtggcagcagcagcagcagcagcaccactgGCAGCaccactaccaccaccaccacccctaCCCCCGCCGCCAAGCAACGAACAGTCAGCGCTGGAACAGCTACAGGAGCCGACAGCTCTGGGACGACTGCAGCAGGCCGAGGATCTGAGCAAGCCACCAGCCACCAGAGAATTATCGCAGTCACCTGAGCAAGTCACGCAACCAGCTCCGTCAACCAAGTCGCTTATCGAGCCACCTGCGCTGGTGTCGCCCGAGAAACTGGAACAGGACAAGACGAAGGACAGTCCCAAGCCAACGACACCGCCAACGCCGCCAGCTCCCTcgccaacaacaccaacaactccAGCAGCAAGCAATCGTCGCAATGGCAGTGTCCGCAAGCGACAGACAAGCCAGGCGGGTAGTCCGCCTGGCGAGGAGCATCCTCATGCCGAGCATCACTCGCACCTGGTCAAGTTGGTGCGCCGCTCGTCGGCGAGCCGGGATGGGATGACAGCGATGCCTGGCGGTGGTTTGCCTGGCGAGTATTCGTTGGCGCAGATGGAGCGTATTATTGACAAGTCGTGGGAGGATCTCATTGAGATCGACAAGACGTCGGAGACATcgaagctgcagcagctggtcGATAATATTGAGAACAAGCTGACCGATCCCAATCAGTGCATCTTCTGCCAGAAGGTGATGTCCTGTCGCAGCTCCCTGCAGATGCACATACGCACCCATACCGGGGAGCGACCCTTTCGGTGCAAGATCTGCGGACGCGCCTTCGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCATAAGATCAAGCCACCGATGCGCAGCCAGTTCAAGTGTCCGGTGTGCCATCAGAAGTTCTCCAACGGCATCATTCTGCAGCAGCACATTCGCATCCATACCATGGACGATGGCAGCGCTGGTCATGCCCAGCTGCAGGGGCAGGGTGGCGATGTCGAACGCTTGGGCATCGAGGATCAGAACTCGAACAAATCGATGGGCACCTCAGACACGCTGGACTTCTCGACGACCGTCTCGGATCATTCGGGTCAGCGATCGGAGTCATCGCAGGGCGGCGACTTCGATGAGTTCATGACCATGGACAGCACCGATGATTCGCGTGACAATTCCAGCGCACTGCTCGACagggagagggagcgagaTAGACGCCTGGCTGGGCACGATGATGAGCGCTCCCGGTCGGACGATGTGGAGGGCAGCGGACGTGAAAGTGCCAGCGGTGAGATGCCCGCCATGGATCTATCATCACCATCGCCATCGGCAACATCGCTGGCACGTCTCTTTGGTGtcggtggcggcggcaacagCGGTGCCACGTGCTCAGGCGctggagttgctgctgctgctgctgctgcagccaatTCAGGCGGTTTGCCGATGTTGCATGGCATGCCGATGCCACCGaatctgctgctgatggccGCGGCCAGGGAGGAGATGCATGCGCTGGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTCGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATGCGTTATCACCCTACGGAGCAAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCGAAGCCATCCTCAACGCTGGAGATGGCGCCTGCGGACCCAGTCACGCCATTGTCGGCACCCATTAAAGAGGAGCCCGAATcagatcagcagcagctgcagctactCGATGAGGGTGGCTGCGACAGTGGCACCAGTAGTGgtacttctgctgctgctgctccagctacTGCTGGCTATCAGCATGAGGCTGCCGCCGATGCGGAGCAATCCCTAATGAAGATGCAGTTGCATGCACATCGATTTCCAGCTGGTCCGCTGGACTTTCAGCAGGCCCTGATGTCGGCCGGCCCGCCCAGCTCTAGCTTGGATCCGCCGGTGAATAACAAGCACTTTTGTCACGTCTGTCGTCGCAATTTCAGTTCGAGTTCGGCACTCCAGATTCATATGCGCACCCACACCGGAGATAAGCCGTTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACGAAGGGTAACCTTAAGGTTCACATGGGCACGCATATGTGGACGAATCCGACATCGCGTCGCGGCCGTCGCATGTCCCTGGAGTTGCCGATGCGACCGGGACCTGGCCCGGGCCCAGGTGCCCCACATGGTGTACCAACGGCTGAGCAGGAGTTCATGCAGCGACGCCCAGAACTGTTCTTCCCATACTTGCCACCCTTCTTCAACGGAATGCCACCCAAGCCCGGCGAATTGAGTCCTGGGGCTTTTGCCAACATACCTCCACCGCATTTTGCAAATGGAGCCAAGTATCCATATCCACCGGGTCTGCTCAGCTTTCCTGGCTTTCTGGGTGGTGCTGGCGGTCATCACCAGCATCCCTATGGCGGAGTGGAGCGAGGCAACAGCAAGTCACCCACATCGGAGCCGGCACAGAGTCCTGCTTCTCGTGAGGATGACTCGGGTCTCAGTAATAATATCTGGCATCCGCTGAGCAGCATTAAGATGGAGAGCAATCAAAATGAGAGCGCTGGCAATCAGAGCGAGCAGGAACaggaaccggaaccggaaccggaacaAGAGCAGGATCAGGAGGATAATAAGAGTGTAGGCATCGATGCGGATGGCGAGCCTGATCCGGATGCTGAGGATTCAGCTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGTGARTGTSNGSGGGAGGGGGGGGSNSSSSDPIGERESLLAKELNADSNNNAADETIEPELEMELQLEKEKEKQSETSLPSSDQPENSNEALDLSVISGNRLPNSGHVALEALQHTKVAVAQFAATALAAASTDPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQNYAEQDDDEAGEEAEDVEELEEEQQLSMPSKEPSRVNGERTELDHARLEESSKTDDECNRLGGRPRRALARERSRETTKTEAEADAEAEGEHELAESEYKPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVNGVNAPEQFAAIRLPFVTPPVVAAAAAAAPLAAPLPPPPPLPPPPSNEQSALEQLQEPTALGRLQQAEDLSKPPATRELSQSPEQVTQPAPSTKSLIEPPALVSPEKLEQDKTKDSPKPTTPPTPPAPSPTTPTTPAASNRRNGSVRKRQTSQAGSPPGEEHPHAEHHSHLVKLVRRSSASRDGMTAMPGGGLPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAGHAQLQGQGGDVERLGIEDQNSNKSMGTSDTLDFSTTVSDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSALLDRERERDRRLAGHDDERSRSDDVEGSGRESASGEMPAMDLSSPSPSATSLARLFGVGGGGNSGATCSGAGVAAAAAAAANSGGLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDALSPYGAKLTLNPNLFAKKPKPSSTLEMAPADPVTPLSAPIKEEPESDQQQLQLLDEGGCDSGTSSGTSAAAAPATAGYQHEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGAPHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLSFPGFLGGAGGHHQHPYGGVERGNSKSPTSEPAQSPASREDDSGLSNNIWHPLSSIKMESNQNESAGNQSEQEQEPEPEPEQEQDQEDNKSVGIDADGEPDPDAEDSAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525326;
90% Identity: iTF_00514342;
80% Identity: -