Dobs003883.1
Basic Information
- Insect
- Drosophila obscura
- Gene Symbol
- bab2
- Assembly
- GCA_018151105.1
- Location
- NW:4969244-5134297[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.63 38 4.7 0.1 2 23 1150 1172 1149 1172 0.89 2 6 0.0013 0.077 13.2 0.9 1 23 1183 1206 1183 1206 0.92 3 6 0.00055 0.034 14.3 2.7 1 23 1216 1238 1216 1238 0.97 4 6 6.3e-06 0.00039 20.4 2.1 1 23 1537 1559 1537 1559 0.97 5 6 7.9e-06 0.00048 20.1 0.2 1 23 1565 1587 1565 1587 0.98 6 6 3.6e-05 0.0022 18.1 4.2 1 23 1593 1615 1593 1615 0.98
Sequence Information
- Coding Sequence
- ATGGGCAGTGAGCACTACTGCTTGAGGTGGAACAATTACCAATCCAACCTGTTAGGGGTGTTTAGTCAATTACTACAAGACGGGAGCCTGGTGGACGTCACACTAGTTTGTTCAGAGGGCACATCCATCAGAGCCCATAAGGTGGTCCTCTCGGCTTGTTCCTCGTACTTCCAGAGCCTGTTCCTGGAGCATCCCGAAAGACATCCAATTGTGATATTGAAGGACGTCCGTTTTGCCGAGCTGCAAACCTTAGTTGAATTCATGTACAAGGGCGAGGTGAACGTGCAATACTGTCAGTTGTCCGCACTGCTCAAGACAGCCGAATCACTCAAGGTCAAGGGTCTTGCCGAGATGACAAACCAGAATACAACGCTGCGCGAACCGGAACGTGAACCCGATCGACTGCGTCCCCATTCGCAGGCTActagcggcggcggcagtggcggtggcgccCACAAGGCCGCCGACAGTCCGGCGGCAGCCCTGGATGCAGCTTCGGCGGCgacctcagcagcagcagcagcagcagcggccaccagcagcagcaccagtggcagtggcagctcctCCACCTCAAcctcagcaacagcaacagcagcagcggcatctGCCACAGCAGCGGCTACAGCGGAGAGTACAGCGACAGGCGGTgggggtggcggtggcggtggcagtggcagtggcagtagtaGTAAAATATCAACatctgccacagcagcagcagcagcggcagcaacagcagcgtcagcagcggcaacatCGGCCACAACAACTGCCACAACGCCTGCCGAAGAAGCCACATCCTCGTCCAGCGGCAGCCACAAGCGAGAGGCGAGCGATCGATGCAGTCCAACGCCAGCGAAGCGCCAAACAGTCTCCGGTTCGGTGAGGATCAATCTCGATGAGgacgatgatgaggaggacgaggaggaggagctggaggatCAGCTGGTGCGGGGCCTGCATGTGGGCGAGGATGTAGACGATGATGTCGATGACATTGACGATGTTGGGGATgatgacgaggacgaggaggaggacacaCCCATGCCGCTAGATCTCTATCAAAGACGTGACGCCGCCTCCGGCTCTGCCTCGGCCGCAGCcgcaggctcaggctcaggctcggCTcagcagagtggtgccaccaccaccacaaccaccgccagcagcagcagcagcagcagcaacaacaacaacctcagcaacaacaataacaacaacaactccagcagcagcaacaacaacaacaacagcagcgggagcggaagcggaagtggaagtggaagcggTATCAAAGCTACCTCAATGGCTGCCTCGGCTGCCAGCAATGGCGAAGGCATCGATCTGGCTGTGGTTGCCgtcgacgatgacgacgacgatgaggacGATGATGTCCTGCAGCATGACGAGGACACCGACAATACACGGCacaatgctgctgctcatcatcagcatcatcatcgtcgccACCATGACGATGATCCCGATGACGACGATGTTGTCGTGGTGGGCAGCGcctcggcagcagcagcagccgcagcagccacaaccacagcaTCGGCTGCGGCAGCAGTGGCCCGAGATATTGCCCAAGTGCTTGCCCATCAGAGCATACGCCTGAGTcaccaccatcatcaccagcagcagcagcagcaacagcagcagcagcattcgcaccaccaccaccaccaccagcaacaacagcaacagcagcagcattcgcaccaccagcagcggcatcaccaccaccacaacgaggatgatgacgacgaggacgagacGCTGGTGGGCTCGGGTGCCCTGCCAACCATACCCAAGACCGAGATCATCGATGACGACTACGACGATGAGATGGATctcgatgatgacgatgaggcggacaacagcagcaatgaCATGGGCCTCAATATGAAGATgggtggaggcggcggcggcggtgtcGATCTCTCCACGGGCTCCACTGTGATTCCCTCGCCACTAATATCCTTGCCCTCATCCtcggccgcagcagcagcggcggcagcagcagccgctgtgGCAGCCGTGGAATCGCAACGCTCAACGCCCgccggtggcggtggcggcggaggaggaggaggcagtgCAACCTGTGCCTCCGATTTGAGTCTGGGGGCTGGCGGGCGTCCAGCATCGCGGAGTTCACGTGATGGCGGACCCGAAGGCAGAGCCACCTCCAGTCTGCTGAGTCCCGGGACTGTGGCCAATCTCTTGCCAGTGCAATCGGTGCCATTGAGCCTGAAGAAAGAAATCGATTGCAGTGAGGACGATAACAGTAGTCACAGTAGACACATGCAACCGCGTTCGGCATCAGCTGGCGGCGGACTGGGCGGCGACCTTGACTACCGCGCCTCCCACGAATCGCTGCTGCGCAACTTCAGCTCTCCGATGAGCGCCATGGCCGCCAGTCGCTGCCCCACGCCATTCGCCTTCCCCTTCACGCCGCTGGGCCTGAGCCTCTTCGACATTGATCCGTCCAGAATACTTAGCCTGCTGCACCATCAGACCTGGCTGGCCGAAGAGGCACTGAGGACTCGGGGTTTGCTGGCAGCACCCAAGGATTTCACCCACCGTTTTACCACTTTAAGCGATCTGCTGACCAAGGACTATCAGCCGGTTGTCGGCCAGTCCCCAACGACGGCCACGTCCACGGccacgacaacgacaacgagcCCATCGTATGCCAAGCAGACCACAACGAACCGTTCCAGCGATGTACAGtacaaacaacagcaacaacagccacaacctCATGCAGGATCTGCACCAGTGGGCGCTCCAGGCACCTCCTCCTCTGGCGGAGTGGCGGCAGCCTTCAACATGCGCTACCCCACACCGACAGCCttctaccagcagcagcagcagcagcagcaacagcaatcgAAGGCGCCCAAGTCCTCGCCCTCGCCCCAACAAATGGCCACCAGCTCCACCTCCATGGCCTGCAGCATCGCCATTGAGTCCGGCAGCGGTGGCGATGACAGCTGCAAGCGCAGCTCGGCGGACAGCGACGAGGTGACCATCGTGGAGTTGCCCAGCGAGCGGAGCGCTCAGCTCTACAAAGAGtcgctggagcagctgctgcagcgacgCCGcatcaccagcaacagcagcagcagcagcacacccGGTGTGGGGCCGGTGGTGAGCTGCCCGCCCACTGGCGGCGTCGGTGGGGTCATTGTCGATGCCACCGGCCTGAGGCAGTACACACAGCTGTTGCTGTCGGGTGCCGGCACACCGGCCAGCTGCACGGACACATCGAGCAGCTGCAAGGAGAAGAGCTCCTCATCGTCTACCTCATCGACGCCGCCGCCCAGCTCCTCGCTGCTggcgcagcatcagcagctcaGCCAAATGCTGAAGAGCCCCTCGGACACGTGCTCCTCGCTGTTCAGCGGCTCGGAGCCCATCGAGGAGGAGACCCGCTGCGTCGTGTGCAACGCCCACTTTCCCAATGTGTGGCTGCTCGAGCAGCACGCCGCCCTCCAGCACCCGCATGTGGGTCCCGGCGAGGAGAAGCCCTTCATCTGTGAGCAGTGCGGCCAGTCGTATCGCTACCGCAGCGCATACGCCAAGCACAAGGAGCAGAATCACCGGGCCCGCCTGCCCGCCGACAAGCTCTTCACCTGCGACGTCTGCGGCATGCAGTTCCGCTACCTGAAGAGCTTCAAGAAGCATCGCCTCAACCACGCCCTCGAGCGACTGCACGGCAAGAAGACCATCGGAGTTGTCGGACGCCTGGGCGGCTCCCTGTCCGTCTCGGTATCGACTCCGGCAGCGGCCGCTGCATCGGTGGGTCCCGTCGTGTCCACTCAAATGGACCAGGATGTGGTGACCAGCTCCCAGGAGCCGATGCTGGCCGATGAGGGCGAGGATCTGCGGGTGAATGTTAAGCGCGAGGGCGCAGACGAGAGCTCCTCCACCCATCCAGAagctggtggcggcggcggcagtgaAGAGCACGAGCAGGACAACACCATCGACTCGGCGGGCATCACGATGCTCTATCAGGACAACAActcctcggcctcggcctccACCAGTGCCACGGAGCCGAACATAAGCAGCTCCGATGGCATTCATAGTACAAACAAGCGGTCGCGAATGCACCACTTGGAAACGGATCCCTCCTACCcacaccaccatcaccaccaacagcaacatcatcaccatcatcatcagcagcagcagcaacagcagcaagggCAGCTGCCACCTCATCTGGGTCATCATGTCTCACTGCCAATGGCGGCCaatgctgcggctgttgcggctgctgccggctcctcatcgtcatcggttgcagctgccgctgttgctgcggccAATGCCGCCGCTCAGGCGGCCAATTCCAGCTCAAATACTGTGGGCGTGGCCAGTGGAAATATtagcggaggcggaggcggtgcCGGGTCCGCTGGCAGCGGCATCAGTTCACTCAGCTCGCTGACATCGCTGATCAACGCCGAACGGATACCGAACGAACAGTTCCTGGGTCTCAATCCCCAGGAGGCGTCGATACTGAATTTCTTGCGCGTCGATGCCGCCGAGCGACAGCGGGACAAGCGGCCGGCCACCTCACGCTTTGCATGCCCCTTCTGCGGCAAGTGTGTTCGCTCCAAGGAGAACCTCAAGCTGCATGTGCGCAAGCACACCGGCGAGCGTCCGTTTGTGTGCCTGTTCTGTGGCCGGGCATTTGGCGGCAAGTCCGATCTGACCCGCCATCTGCGCATCCACACGGGCGAGCGGCCCTACCACTGTGAGTCGTGCGGCAAATGCTTCGCACGGGCGGACTATCTATCGAAGCATCTCACCACCCACATTCACAATGCGCCGCGCTGA
- Protein Sequence
- MGSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPERHPIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPEREPDRLRPHSQATSGGGSGGGAHKAADSPAAALDAASAATSAAAAAAAATSSSTSGSGSSSTSTSATATAAAASATAAATAESTATGGGGGGGGGSGSGSSSKISTSATAAAAAAATAASAAATSATTTATTPAEEATSSSSGSHKREASDRCSPTPAKRQTVSGSVRINLDEDDDEEDEEEELEDQLVRGLHVGEDVDDDVDDIDDVGDDDEDEEEDTPMPLDLYQRRDAASGSASAAAAGSGSGSAQQSGATTTTTTASSSSSSSNNNNLSNNNNNNNSSSSNNNNNSSGSGSGSGSGSGIKATSMAASAASNGEGIDLAVVAVDDDDDDEDDDVLQHDEDTDNTRHNAAAHHQHHHRRHHDDDPDDDDVVVVGSASAAAAAAAATTTASAAAAVARDIAQVLAHQSIRLSHHHHHQQQQQQQQQQHSHHHHHHQQQQQQQQHSHHQQRHHHHHNEDDDDEDETLVGSGALPTIPKTEIIDDDYDDEMDLDDDDEADNSSNDMGLNMKMGGGGGGGVDLSTGSTVIPSPLISLPSSSAAAAAAAAAAAVAAVESQRSTPAGGGGGGGGGGSATCASDLSLGAGGRPASRSSRDGGPEGRATSSLLSPGTVANLLPVQSVPLSLKKEIDCSEDDNSSHSRHMQPRSASAGGGLGGDLDYRASHESLLRNFSSPMSAMAASRCPTPFAFPFTPLGLSLFDIDPSRILSLLHHQTWLAEEALRTRGLLAAPKDFTHRFTTLSDLLTKDYQPVVGQSPTTATSTATTTTTSPSYAKQTTTNRSSDVQYKQQQQQPQPHAGSAPVGAPGTSSSGGVAAAFNMRYPTPTAFYQQQQQQQQQQSKAPKSSPSPQQMATSSTSMACSIAIESGSGGDDSCKRSSADSDEVTIVELPSERSAQLYKESLEQLLQRRRITSNSSSSSTPGVGPVVSCPPTGGVGGVIVDATGLRQYTQLLLSGAGTPASCTDTSSSCKEKSSSSSTSSTPPPSSSLLAQHQQLSQMLKSPSDTCSSLFSGSEPIEEETRCVVCNAHFPNVWLLEQHAALQHPHVGPGEEKPFICEQCGQSYRYRSAYAKHKEQNHRARLPADKLFTCDVCGMQFRYLKSFKKHRLNHALERLHGKKTIGVVGRLGGSLSVSVSTPAAAAASVGPVVSTQMDQDVVTSSQEPMLADEGEDLRVNVKREGADESSSTHPEAGGGGGSEEHEQDNTIDSAGITMLYQDNNSSASASTSATEPNISSSDGIHSTNKRSRMHHLETDPSYPHHHHHQQQHHHHHHQQQQQQQQGQLPPHLGHHVSLPMAANAAAVAAAAGSSSSSVAAAAVAAANAAAQAANSSSNTVGVASGNISGGGGGAGSAGSGISSLSSLTSLINAERIPNEQFLGLNPQEASILNFLRVDAAERQRDKRPATSRFACPFCGKCVRSKENLKLHVRKHTGERPFVCLFCGRAFGGKSDLTRHLRIHTGERPYHCESCGKCFARADYLSKHLTTHIHNAPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00601388;
- 90% Identity
- iTF_00563995;
- 80% Identity
- iTF_00563995;