Dnov003110.1
Basic Information
- Insect
- Drosophila novamexicana
- Gene Symbol
- bab1
- Assembly
- GCA_003285875.3
- Location
- NW:320306-421999[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-17 3.2e-14 51.9 0.0 1 43 586 629 586 631 0.95
Sequence Information
- Coding Sequence
- atggcgTCAACGGAGACGCCAACGTCGCGACAAAGCAGCGATCGCAGCAACGCCGCAGCGACTGCGCAAACGGACAGCGAAACCTATGCAACGGAGCAGGCGCAAGCGGCGCAGCGACAgcgcagcggcggcggcggtggtggcggcggttCGCCAGCATCGCAACAGGATAAATCAAAGACCGTTAGCCCGCCGTTAACAACGCCACCggacgccaacgccaacgcgaacgccaacgccaatgtcgacgtcaacgtcaacgcgGGCAGCTCCTCGCCCGGCTCCCGTTCGACGCCGCAGCATCAGCTGCCGCAACAGTTCTGCCTGCGCTGGAACAACTACCaatcaaatctgacaacgatATTCGATCAGCTGCTGCAAAACGAATCCTTTGTCGATGTGACGCTCGCCTGCGACGGCCGCTCGATCAAGGCACACAAAATGGTCCTATCCGCCTGCTCGCCCTACTTCCAGACCCTGCTCGCCGAGACCCCCTGCCAGCATCCGATCGTCATCATGCGCGACGTCAGCTGGTGCGATCTGAAGGCCATTGTCGAGTTCATGTATCGCGGCGAAATCAATGTTAGCCAGGATCAGATTGGCCCGCTGCTGCGCATCGCCGAGCTGCTCAAGGTACGCGGATTGGCCGACGTCACCCAAATGGAGGAGATCAatacggcagcagcagcagcggcagcggcggcggcagcggcagcaactgccTCCTCGACACCGACTGCACAACATTCGCCCAAGAATTCGCCGGCAGAGCGCGAGGGCAGCGAAGAGCAGCTGCTCTCTTTCATGCAGCCCGAGAAGAAGCTGCGCAGCGGCGACTGGGACTGCGGCGAGCTGCGCTTGTCGCCGCTGGAACGCCAGCAGAGCCGCAATGTGCGCAAGCGTCGCTGGCCCTCGGCCGACGCCATATTCCAGGCGCCCGCCAGCCCGCTGAGCAGCCTGATCGCCGCCGAGCGTTTGGAGCAGGAGCAAAAGGAGCGTGAGAGACAGCGAGATTGCGGCATTTTGACGCCGCCGCCAAAGCAAATGGCGCTGCCGCTAGGCTCAtcgggcagcggcagcgttaCGCCGCGTCGTCTGACgcccgctgcagcagcgctgGAAACGGCGCTGCACGGCCTGGACATGCCATCACCCGCAACAACGCCAGCGCCAGCTggagcggcagcggcagcggcagcgggtCGCTGCCAACGCGCGCTCGCGCAGTCGCTGCCCagcccgcagcagcagcagcagcagcaccaacagcagcagcagcagcagcatctgcatCACCTGCAACAGCATCAGACGCATCACGGGCTGGGCCATGCGCCCGGCACTTCCACTTCCGGCGCTTCCGTTCATCCCGCTGCCGCTGAGTCGCGCTTTCCGCTCGGCTCTGCCGCCGCCATGGCCGCTGCCGCCATGGAGCTGAgcgtcgcagccgcagctgagcCGCgtctgccgccgccgctgccgcacCATCATCATAGCGGACCCCCCACCGGCGGCAGTGCAGCATCGCTGGCCGACGATATGGAGATCAAGCCGGGCATTGCGGAAATGATACGCGAGGAGGAGCGGGCAAAAATGATGGAGAACTCGCACGCTTGGATGGGCGCCACCGGCTCCACGCTAGCAGCAGACAGCTATCAATATCAGCTGCAGTCGATGTGGCAAAAATGCTGGAACACCAATCAGAATCTGATGCATCATATGCGCTTTCGGGAGCGCGGCCCGCTTAAGTCGTGGCGGCCCGAGACGATGGCCGAGGCCATATTCAGCGTGCTGAAGGAGGGCCTGTCGCTGTCGCAGGCGGCGCGCAAATATGATATACCCTATCCGACGTTTGTGCTGTATGCGAATCGGGTGCACAATATGCTGGGACCGTCGATCGATGGCGGGCCCGATTTGCGGCCAAAGGGGCGCGGGCGGCCGCAGCGCATACTGTTGGGCATCTGGCCGGATGAGCATATTAAGGGCGTCATCAAGACGGTCGTGTTTCGCGATACCAAGGACTTAAAGGACGACAGTTTGGGCGCGCATCTGCCACCGTACGGCCGCCATTCGCCCGTGTTTCCCTTGCAGGACATGACGTTAAGCTATCCAGGCGCTAGTGGCGGCATGCCGGTCGGCGGCGCCGCCAGCCTCAGCGCTCTGGCCTGCCCGAATGGCATGGGCAGCGGCGGTGGAGGAGGCGCTGCCGTTGGGgctggcggcggtggtggGGATCAGCAAATGTCCCAGGAGCAAATGTCGGCGGTGGCCGCCGTTGCGCACAATATACGTCAGCAGATGCAAATGGCCGCCGCAGCGCAGCATCAGCACGGGGAGGCGgggccgccgccgccgccggggGCTCTGTTCAATTTGCCGCCGCATCTGGCGGGTGGCGGCGGGCCGGGCAGGGCCAGCATATCGCCGGCACTGAGCAGCGGCTCAAATCCCTCAATGGGACCGCGGCATGCACCCTCGCCCTGCGGTCCCGCCGGCCTCATGCCGAATCTGCCGCCCAGCATGGCCGTTGCACTGCACCGTGATCCGGCCGCCGCCGCGCTgctcagccagcagcagcagcatcacctccagcagcttcagctgcatcagcaacagcagcaacaacaccaacaacaacagcagcagcacgcttTACACCAGCAACAGgcgcaggcagcggcagcagcagcagctgctgcggcggcggcggcggcgcatCCGCATCACATGCAGCCACACAAATCCGGTTTCGGTGCCAGTTCCATGCCCACAGCCAGCGCTGGCTCCTCcgttgcccagcagcagcagcagcagcagctggacaaGTCCAAGTCGAAGGGTAGTCCGCTGCGCAGCGAGACGCCGCGCCTACACTCGCCGCTCGCCGAGCTGGGCCTGGAGCTGGGCTACAAGCGCGAGTTCTCGCCCACTCGCCTCTTTGCCGAGGATCTGGCTGAgctggtgggcgtggcgcCCGCCACAACAAGCAGCGCAGCGACGCCGTCAACAGGCCAACCCACAGCCGGAGCAAGTGGAGCGACCACCACGGACATCTGCtccggcagcaacagcagcggcggcggcatcaaGGTGGAGCCCATTACGACCAGCAGCGAGTAA
- Protein Sequence
- MASTETPTSRQSSDRSNAAATAQTDSETYATEQAQAAQRQRSGGGGGGGGSPASQQDKSKTVSPPLTTPPDANANANANANVDVNVNAGSSSPGSRSTPQHQLPQQFCLRWNNYQSNLTTIFDQLLQNESFVDVTLACDGRSIKAHKMVLSACSPYFQTLLAETPCQHPIVIMRDVSWCDLKAIVEFMYRGEINVSQDQIGPLLRIAELLKVRGLADVTQMEEINTAAAAAAAAAAAAATASSTPTAQHSPKNSPAEREGSEEQLLSFMQPEKKLRSGDWDCGELRLSPLERQQSRNVRKRRWPSADAIFQAPASPLSSLIAAERLEQEQKERERQRDCGILTPPPKQMALPLGSSGSGSVTPRRLTPAAAALETALHGLDMPSPATTPAPAGAAAAAAAGRCQRALAQSLPSPQQQQQQHQQQQQQQHLHHLQQHQTHHGLGHAPGTSTSGASVHPAAAESRFPLGSAAAMAAAAMELSVAAAAEPRLPPPLPHHHHSGPPTGGSAASLADDMEIKPGIAEMIREEERAKMMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDLKDDSLGAHLPPYGRHSPVFPLQDMTLSYPGASGGMPVGGAASLSALACPNGMGSGGGGGAAVGAGGGGGDQQMSQEQMSAVAAVAHNIRQQMQMAAAAQHQHGEAGPPPPPGALFNLPPHLAGGGGPGRASISPALSSGSNPSMGPRHAPSPCGPAGLMPNLPPSMAVALHRDPAAAALLSQQQQHHLQQLQLHQQQQQQHQQQQQQHALHQQQAQAAAAAAAAAAAAAAHPHHMQPHKSGFGASSMPTASAGSSVAQQQQQQQLDKSKSKGSPLRSETPRLHSPLAELGLELGYKREFSPTRLFAEDLAELVGVAPATTSSAATPSTGQPTAGASGATTTDICSGSNSSGGGIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00563246; iTF_00616827; iTF_00616976;
- 90% Identity
- iTF_00616827;
- 80% Identity
- iTF_00563246;