Dniv008024.1
Basic Information
- Insect
- Drosophila niveifrons
- Gene Symbol
- -
- Assembly
- GCA_035046325.1
- Location
- JAWNOC010000052.1:11978387-11980951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.85 10.1 3.7 3 23 280 300 278 300 0.97 2 12 0.005 0.33 11.4 0.6 1 23 306 331 306 331 0.92 3 12 0.0045 0.29 11.6 0.7 2 23 339 363 338 363 0.93 4 12 0.00028 0.018 15.4 2.2 1 23 375 397 375 397 0.97 5 12 2e-06 0.00013 22.1 0.1 1 23 404 426 404 426 0.98 6 12 0.013 0.84 10.2 0.2 1 23 432 454 432 454 0.97 7 12 0.069 4.5 7.9 3.0 1 23 460 483 460 483 0.97 8 12 0.0053 0.34 11.4 4.6 1 23 489 511 489 511 0.97 9 12 0.11 7.1 7.2 5.3 2 23 518 539 517 539 0.96 10 12 0.00012 0.0079 16.5 0.2 1 23 655 678 655 678 0.95 11 12 0.1 6.8 7.3 1.3 1 21 684 703 684 706 0.75 12 12 1.7e-07 1.1e-05 25.5 3.0 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGCGAGAACGTATTCCATACACACGCTGTGTCGCATTTGCCTGAATCTGCTGCAGAACGATGCTGCCTATGATTTATATATGGTGCCTGGTCTGGCCAAAAAACTATGTCTCTGCACTTCGCTGTCGGTGGAGCAAAACGATGGCTTCCCCAAGAATCTATGCACCAACTGCTATACGCGGCTCAACGATATGCACGACTTTCAAAAACTCTGCGTCGATTCAGTGCAAAAGTTTCAGGATATGGTCGCCAGCAACGCCTTCACTTGTCAATCCAATTTCGATGTGCTGGACCCAAGTACGGCAACACATGATCTGCCCAACGAGGATGAGGATCACATTAATTTCGATCCGCTGTTAAATCACAAAATGGAACTAATCGAAAACGAGGAGGATGTGTTCAAAATGCTCGAAGATTGCGACAAGGAGGCCGAAGAGGTGGAAAAGGAAGTGAAGCAAGATAAAAAGCTGAAGGAGATCAAAGAGCCCATTACCATCAACATGTTCAACGAGGATTCATCGTCAATAGAAAGCGGAAACGACAACGATCGCGATATTGATTTTGAGCCCAACAGTAGCGACGATGACATTCCTCTGGCCCAAAGGATGCGCAGCAAAACCACCGCCACAAAGAGCACAAGAGCAGCCAAGTCGCAAGCCAAGcctaaaaagaaaactaaagttGAAGACGATGATGAGTTTAGCACTTCATCATCATCCgaagatgatgacgacgacgatgatgatgatgaagagggCGGCGGAAAACGAGAGAAGCCCAAACGCAAACGCATTCCAGCGGCTGAGCGGCATCTGCATCGCATCATCGACTGTCACATCTGTCATCAAAAGTTCAAGAAGGCCATACGCTATGAGGAGCACATGAAATACCACAACGATCTGTTGCCCTTCCAGTGCAAAGTGGAGAGCTGCAAGAAGGGCTTCACCACCGCCAATGGACTGCGCATACATGTGGATCACGCCCACACGGAGCTATCCGAGGTGCATGCCTGCAGCGTCGAGGGCTGTGGCAAGACATTCCCACGCGTCCGTCTGCTCACCTTCCACATGAAGAAGGTGCACAACATTTCCAAGTCTGCGGCACCGTTGCGCGACTTTCCCTGCACCGAATGCGACACCGTGTTCCGTTGTCCCACAGCGCTCAAAAAGCACATGTACAAGCACACGGGCGAAGAGCTGCCATATCCATGTAACATCTGCGGTAAGCGTTTTGTCATCAACAGCGCACTCAGGGATCACCTTATGCGGCATGCAGGCATTAAGAATCACGTGTGTCCATATTGTGGCGTGGGCAAGACCACGCGGCAGGAATGGAATGCTCACATCTTGACGCACACCAAGGAGAAGAAGTTCAAGTGCCGACAGTGTGATCATGCTTCGCACAACAAACAGGCGCTCTCGAATCACGTCAAGGTGGTGCACATGAAGATCAAGAACTTTGCCTGTCAATACTGCGGCAAGACCTTTGGCAAGTCGCATGCGTGCAAGGTGCACGAACGCACGCACACCGGCGAAAAGTGTTGCGAGTGCAAGATCTGTGGCAAGATATTCCTCTGCGAGAAGAGTCTGACGAAGCATCTGAAAACGCACGAGAAACGCGATTTGCCACCCGTCGATATGCATCGCCCACTCAATATTCCGTTGCCGGGTGCCCCCCATCAGATGCCAGAACACATGCAGGGAGATGGAATGATGGGTGGCCAGCATGTGGCCGACGATCTGCTCAAGGCTTGTGGCGGCGGGCCCGCCCCAGGCATGCCAGGCGTTGGtgttggagtcggagtcggagcaGGCATTCCCGCGAAGCCAAAGAACTCGCGGCGTGTGCAACGCGTGGATATCTCACAACTGGCGGGCACGTCGGTTAATCCCATACCTTCCGTTTCGGTGCCATCGTGGTCGCCGCAGGTGAACTTCACCAAGAAAGAGGGCCAGCACATTTGTCCgggctgtgggcgtggcttcAACAATATTGGCAACATGAAACTCCACTATAAGATCATACACGAGAAGGTCAAGGATTTCGCCTGTCGTTTCTGTCCGAAGCGTTTCTCCAAGGCGCAAATTTTACGGCATCATGAATGGATTCATACGGGCGAGAAGCCCTTCGAGTGCAAGATCTGTGGCAAGCATTTCCGTCAGGAGACGGCGTTGAAGAAACACATCAAGACCCACGACAAGCCCAACAGACGCAACTACATCCCGGAGAAGGTGACGGAGGCGCCGACAACGTTTCACAAAATCGAGCCGCGTGAAATCGATCGTGAGCCAAGGAACTATGAACAGTATCAGGATCCAGCCGCTGAGCGTGCTGCGGCCACCGCTGAGTTGCTGGCCCATCAGATCGAGGAGAATGAGGCGAAACGTAAGGCGGATATTGAGCGGCGAAAGATTCAGGAAGCCGCCTGTGAGCAGCTGAATAAACTGCAGAAGCAGCAGGAAATCGAGAAGGCAACGACATCCTATGATGGTTACTATGCACAAAAGGCTCAAGCCGAGGGCATCAGTGTCGATGCCCTCAAAATCGATCATGTGTAG
- Protein Sequence
- MDVARTYSIHTLCRICLNLLQNDAAYDLYMVPGLAKKLCLCTSLSVEQNDGFPKNLCTNCYTRLNDMHDFQKLCVDSVQKFQDMVASNAFTCQSNFDVLDPSTATHDLPNEDEDHINFDPLLNHKMELIENEEDVFKMLEDCDKEAEEVEKEVKQDKKLKEIKEPITINMFNEDSSSIESGNDNDRDIDFEPNSSDDDIPLAQRMRSKTTATKSTRAAKSQAKPKKKTKVEDDDEFSTSSSSEDDDDDDDDDEEGGGKREKPKRKRIPAAERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVESCKKGFTTANGLRIHVDHAHTELSEVHACSVEGCGKTFPRVRLLTFHMKKVHNISKSAAPLRDFPCTECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKVHERTHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPVDMHRPLNIPLPGAPHQMPEHMQGDGMMGGQHVADDLLKACGGGPAPGMPGVGVGVGVGAGIPAKPKNSRRVQRVDISQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHDKPNRRNYIPEKVTEAPTTFHKIEPREIDREPRNYEQYQDPAAERAAATAELLAHQIEENEAKRKADIERRKIQEAACEQLNKLQKQQEIEKATTSYDGYYAQKAQAEGISVDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570408;
- 90% Identity
- iTF_00534754;
- 80% Identity
- -