Dnik000675.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- -
- Assembly
- GCA_008042635.1
- Location
- VNJV01012023.1:9752-12883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.1 11 7.1 0.1 1 14 396 409 396 416 0.78 2 8 0.00012 0.014 16.2 0.7 1 23 813 836 813 836 0.97 3 8 0.00013 0.015 16.2 2.0 2 23 874 895 874 895 0.97 4 8 1.8e-05 0.0021 18.8 1.9 1 23 901 923 901 923 0.96 5 8 1e-06 0.00012 22.8 1.0 1 23 929 951 929 951 0.98 6 8 0.0006 0.068 14.1 1.5 1 23 957 979 957 979 0.97 7 8 0.01 1.2 10.2 0.0 2 23 986 1007 985 1007 0.96 8 8 2e-05 0.0022 18.7 0.3 1 22 1013 1034 1013 1034 0.96
Sequence Information
- Coding Sequence
- ATGCAACGTCAGCTATGCGGCAGTGTTTACACCTGGAACTGTGCCGGCGAGCTCTACGCCATCGAGTGCTCCCTGTGCGAGGAGCGACCACTATGCGCCCTCTCCGAGTTCCCGGAGCACATGGACGTGTGGCACACCGACTGGGAGGATCCGGACACAGTCACATCCTCGGATGAGGTCAGCTCGGTGGTAGCCACCCCCGAGGATGAGCTCATGCAGGAGGTGCTGGCCGAGCAGCGGATCAGTGGCGAGGACAATGAACTGAAGCAGCTGCTGGTGTGGCAACTGAATGCCATCGATGGGGAGCAGCAGGTGGAAGAAGCCAGCGGCGGCGAGGAATTTCCTGGCGAGGCTATGGTGGTAATGAATGAGGCCGCAGAGCCGCAGGAGGAAGCAGTGGTAGAGGATGCCGAGGAACCAGCTGGAAAGTGTGCACCAGTGGCAGAAGAAACGGGAGAATCTGTAGTGTCTTCATCGGTATCCATTCCCTTGCCAGCTGTTGGCCTCCAGGACGCTGCGCCAGTTCCCGAGGGCCAGCGCCTGACCACCCAGCATATCCATCGCCTGATCGATCTGTACCGCTCGGAGCCGCGTCTTTGGAATCAGACGCATCCCGAGTTCCACGACATGGAATTATGCCGCGAGTCCTGGCGTCGCATAACCGAAGCATGGAGCTGTTACTGCGGACGCAGCTTCAGCGTAACAGACGTCCGGATCCGCGTGTCGACGCTCTGTCAGCGATTTCTCAAGCAGCGGGAACGCCTGGAGGCGGACGGTGAACTGGATGATGCCGCCAAGTTCGTCCACTTCGATCAGCTGAGCTTCCTGTGCGAACAGCAATCGCTGGTGAAGCGGCAGCGTCACTATGCCCGCGAGAACCGACGACTGCTGCAGCTGTACGAGCATTATCCGATCCTCTGGCACAATGCCCACAAGCGAATCAGGTGTCCGGAAACTGTGCGCCAGCGTCACGAGGCCCACCTCGGGCTCCAGCTGGCGTTGCAGCTGTCCGGCATTAGCCTGTCGCCGGTGGTCATCCAGCGACGCCTGCAGTCGCTGCGCAAGCGCTATCGCCTCGAGAAGATCAGCTATCTGCACAGTGTGGTCGAGGGCAAGCAGGCGGAGTTTGTCTCGGGCTTTGAGCACTATGCCGAGATGGAGTTTCTGCACAAGCACATCGATCCGTATGTGTGCGCTGTCTGCGGCAAGATCTTTGAGAATCTGACGGGTCACCAGTCGCATGTCCAGAACAACTGTGAGGTGAGGCGGAGTGTGAGCGTCGAGATGCAGGAGAAGGGCGAAAAAGACGAGAAAAAGATGGATAATCATCAGAAGAATGAGTTAAAGGTTCAGCTTGACAAAGTGTTGACCGATGTGCTGAAGGACGTAAGTAAAGAGGCTAACCCAATTTCAAAAGAGGAGACCCCACGGAAGTCCGAGGAGAGCGAACCGCCCTCTGGGGATCAGAAGACCCCCAAAGAAAAGGAAGACGCCGATGCCGGACCCCAATTGCCAAGCTTGGCGGAGGCCTGCGCTGCTGCCCAACTGGAGGATCCCTGCCAACTGCAACTGGAAGCCAGCGGGGAGGTTTGCGAAGGCAAGGCCACCTCCTCCGGCAGCAGTCCGCGTCTTCGTTTGAGCCTCGAACACACCCAGGACCTTATCGAACTGTACCGCAGCCACGTCTGCCTGTGGGATCCCAATCACCTGGACTATCATGCCCGGAAGCAGCGTCGCCTGGCCTGGCAGGCCATTACCAAGGAGCTGAACTCCAGGACGGGACAAAAGTACAGCTGGCAGTTGCTGCACCGCAAGATCACGGACTACACAAAGTACTATCGCAAGGAGAGACAGCTGACAATGGAGGAGAAGCAGtctcagcagcaggagcagcagcctcagcagcaggagcagcagtctcagcagcaggagcagcagtctcagcagcaggagcagcagcctcagcagcAAGAACAGCAGcctcagcagcaggagaagcaaCCGCAGCAGCTTTTAGAGGAGGAAAATGAAACAAAGGATAAGAAGAACAAGTGGAACTTTTACCTGGAGTTTGCCTTCCTCGACGACGTTCTGTCCATGAGCAGCGAAATGCAGAAGGGCCTGAACCATCGGGACAGCAACATGAAGATCATATCCGTTTACCAGAGTTATCCGCAGCTCTGGTGCACCGATCATCCCGATTACACGAAGCGCCGccaacggcagcggcagctggagTCGCTGTGCACCCAACTGCAGGAGGAGAGCAACTTGCAGGTCACCGTGGAGCGGCTCAAGAGTCGACTGATTGAGTTTCGGTGCCAGTATCGTCACTGCAAGGAGGCCCGCATGGAGGCTCTAAAGAAATCAGAGCCCTGGACGCCCAGTTACGATTACTACGAGCCGCTGCGCTTCCTTGAACTGCATGTGGCTCCCTTCCAGTGTCCCAGATGTCCGGCTTCGTTCAAACGGCGCACGGACTACTTGCAGCACGAAAGGAATGTCCATGCCGATGTGGAGAAGTCCCTGGACGGCGAGTTTCGCTACCTGAGGCGACGCAAGGCCAAGGGATCCAAGGAGgaggatcagcagcagcaggaggcgTTGGAGCTGGCCAACGTATGCCACATTTGCGGCCTGAAGTTCTCGCTGCGGAACAGTCTCCTCTCCCATCTGCGGCGGCATCTGGGCCAGCGTAGCCACGCCTGCAGCGAATGTCCCAAGAAGTTCTTCAGCTCAACGGCCCTGCGCGTCCACCAGCGCAGTCACACCAAGGAACTGCCCTACGTCTGTGAGCACTGTGGCCGCGGCTTCGTGAATGCCAGCAAGTTGAACCAGCATGTCAAGCGGCACAGGAACCAGCGCGACTTTCCCTGCAATCGATGCGACAAGGCCTTCTACACGGCCCACGAGCGGGATCGGCATTTGCGGGCCCACCTCAACATCCGGGACAAGGTGTGTCCGTACTGCTCCCGGGCCTTTGTGGTGGGCAGTGCCTACTACGCCCACCTAAATCTCCATCGCAGCGAGAAGCGGTACGTGTGCACCGGCTGTGGCAAGAGGTTCGCCCAATACGCCGGCCTCTACAAGCATCGGCGACGCTGTCTGCCAGCCGAGGTAATCGAGGAGTAG
- Protein Sequence
- MQRQLCGSVYTWNCAGELYAIECSLCEERPLCALSEFPEHMDVWHTDWEDPDTVTSSDEVSSVVATPEDELMQEVLAEQRISGEDNELKQLLVWQLNAIDGEQQVEEASGGEEFPGEAMVVMNEAAEPQEEAVVEDAEEPAGKCAPVAEETGESVVSSSVSIPLPAVGLQDAAPVPEGQRLTTQHIHRLIDLYRSEPRLWNQTHPEFHDMELCRESWRRITEAWSCYCGRSFSVTDVRIRVSTLCQRFLKQRERLEADGELDDAAKFVHFDQLSFLCEQQSLVKRQRHYARENRRLLQLYEHYPILWHNAHKRIRCPETVRQRHEAHLGLQLALQLSGISLSPVVIQRRLQSLRKRYRLEKISYLHSVVEGKQAEFVSGFEHYAEMEFLHKHIDPYVCAVCGKIFENLTGHQSHVQNNCEVRRSVSVEMQEKGEKDEKKMDNHQKNELKVQLDKVLTDVLKDVSKEANPISKEETPRKSEESEPPSGDQKTPKEKEDADAGPQLPSLAEACAAAQLEDPCQLQLEASGEVCEGKATSSGSSPRLRLSLEHTQDLIELYRSHVCLWDPNHLDYHARKQRRLAWQAITKELNSRTGQKYSWQLLHRKITDYTKYYRKERQLTMEEKQSQQQEQQPQQQEQQSQQQEQQSQQQEQQPQQQEQQPQQQEKQPQQLLEEENETKDKKNKWNFYLEFAFLDDVLSMSSEMQKGLNHRDSNMKIISVYQSYPQLWCTDHPDYTKRRQRQRQLESLCTQLQEESNLQVTVERLKSRLIEFRCQYRHCKEARMEALKKSEPWTPSYDYYEPLRFLELHVAPFQCPRCPASFKRRTDYLQHERNVHADVEKSLDGEFRYLRRRKAKGSKEEDQQQQEALELANVCHICGLKFSLRNSLLSHLRRHLGQRSHACSECPKKFFSSTALRVHQRSHTKELPYVCEHCGRGFVNASKLNQHVKRHRNQRDFPCNRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRSEKRYVCTGCGKRFAQYAGLYKHRRRCLPAEVIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00488858;
- 90% Identity
- -
- 80% Identity
- -