Dnik011035.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila nikananu
Gene Symbol
-
Assembly
GCA_008042635.1
Location
VNJV01016014.1:8344-10299[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00024 0.027 15.3 5.0 2 23 143 164 142 164 0.98
2 9 5.3e-07 6e-05 23.7 3.1 1 23 170 192 170 192 0.99
3 9 3.5e-07 3.9e-05 24.3 1.0 1 23 198 220 198 220 0.99
4 9 4.4e-05 0.0049 17.7 3.5 1 23 281 303 281 303 0.99
5 9 8.9e-07 0.0001 23.0 0.9 1 23 309 331 309 331 0.98
6 9 2.8e-06 0.00032 21.4 5.6 1 23 337 359 337 359 0.99
7 9 4.1e-06 0.00046 20.9 1.0 3 23 493 513 491 513 0.98
8 9 5.5e-06 0.00062 20.5 0.5 1 23 519 541 519 541 0.99
9 9 1e-07 1.2e-05 25.9 2.2 1 23 547 569 547 569 0.98

Sequence Information

Coding Sequence
ATGCATCTGAACCATGCGACTGCCGCAACCGCAGCCATGGCCAACTACCAGCACTACCAGCTGCCAGCCTCCcatggtggtggcggcggcgcgggaggaggcggcggcggaggagggggaggcggtggcggtggtggtggagctggCCTGCAACAGCCCCCGACGCTGGCCAGCTTACAGCAGAGCCCGTTCGCCCTGCATCAACTGACTGCGGTCCAGGCCATCCAACATCCCACCCACCAGGCAATGCTCCATCCACAGCATCCGCTGGTCCATCTGCTGGACATTTCCACGACCACGACGAatagtggcggcggcggcaacgggGGTGCCGGCAATCATACGCCCATTTCACCCATGAAACAGGAAGTGCAGAGCGTAATcagcgaggaggaggtggtggtggacGATCCGCGCAAGAAGAAGCAGTGCCACGTGTGCAAGAACAAGTTCCGGCAGCTGACCACGTTACGCAACCACATGAAGATCCACACGGACGAGCGGCCCTACAAGTGCAAGCACTGCGACAAGGCCTTCCGACAGATCTCGACGCTGACCAACCACGTGAAGATCCACACCGGCGAGAAGCCGTTCACCTGCAACATCTGCGCCAAGGACTTTCGTCAGCAGAGTACGCTGATTAACCACATTAAGACGCACAAGGCGGCGGAGTCCAGTACGCCCACTTCCCTTCTGAGCTATCAACCGCAGCAGGGCAGCGGCAAACATCGAAAGTCGCAGATGCAGgtctaccagcagcagcatcagcgcGTCCAAATCTCAAAGACCCTGTACTCCGGCAGCTATAGCTCTCCGGCGGCCGAGGAGCTGGTGAAGCCGTATCAGTGCAGCGTCTGCAAGCGACGCTTTCCGCAGCTGACCACGCTGCACAACCATGAGCGGACCCACATCGATCCCAAGCCCTACAAGTGCGAGACGTGCGACAAGTCCTTCAGCCAGCTGGCGACACTGGCCAACCACAAGAAGATCCACACGGGCGATAAGCCGTACACGTGTTCCTACTGCCACATGCAGTTCCGCCAGCAGAGCACCCTCACCAACCACCTCAAGACGCATACGCATCAGTTAGCCGGCGGTGGCgttggagcaggagcaggaggcccCGGAGGATCagcaggaggcggcggcggaggcgccGTAACAGCCACAGTGGATCACTCAATGCCCCCCACTCTGGCGCCCGGGACGCAGCAGCTGACGACTGGACTGTTGCCGAACAACCTGCACGGCAACACGCCGAACATCATCCAGTTGGACCATCATCCGTTACTGCATTTTCTCGATGGCAGCACCACGGTCAGTTCGGTGgtggcaacggcggcggccgTCACTAAGGTTGAGCACTTCCAGCCGggaagcggaggaggaggaggaggaggatcgcCGCCGGGCCGCATGACCATTGTGGGCAACATCAATATGCTGAAGGGCGACAATCCGGATAGGCCGTTCGGCTGCAGCGTTTGCCAGCGATTCTTCTCGCAGCAGAGCACCCTGGTCAATCACATCAAGACGCACACGGGCGAAAAGCCGTACAAGTGCAAGATCTGTGAGGTGAACTTCCGGCAAGTGGCCACGCTGAACAACCACATGAAGATCCACACCGGGGAAAAGCCCTACAACTGTTCCTACTGCCCCAAGCAGTTCCGGCAGAAGAGTACGCTGCAGAACCACCTCAGGGTGCACACCTGCTAG
Protein Sequence
MHLNHATAATAAMANYQHYQLPASHGGGGGAGGGGGGGGGGGGGGGGAGLQQPPTLASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTTNSGGGGNGGAGNHTPISPMKQEVQSVISEEEVVVDDPRKKKQCHVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPTSLLSYQPQQGSGKHRKSQMQVYQQQHQRVQISKTLYSGSYSSPAAEELVKPYQCSVCKRRFPQLTTLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKTHTHQLAGGGVGAGAGGPGGSAGGGGGGAVTATVDHSMPPTLAPGTQQLTTGLLPNNLHGNTPNIIQLDHHPLLHFLDGSTTVSSVVATAAAVTKVEHFQPGSGGGGGGGSPPGRMTIVGNINMLKGDNPDRPFGCSVCQRFFSQQSTLVNHIKTHTGEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSYCPKQFRQKSTLQNHLRVHTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00504822;
90% Identity
iTF_00565509;
80% Identity
-