Basic Information

Gene Symbol
Trerf1
Assembly
GCA_008042635.1
Location
VNJV01009921.1:1-8426[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.3e-09 1.4e-05 25.5 0.1 2 45 1443 1486 1442 1487 0.93

Sequence Information

Coding Sequence
ACTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGCGGCAAGTCCTACTGCGACGCCCGCTCGCTGCGACGGCACTCGGAGAACCACCATGCCGGCGGAGCGACCacgcccaccaccaccagccagCAGTCGCTATCGCCCACCGCCAGCTCGAGCGgggcgagcagcagcagcagcagcggcgtgGGGGTGGCCACCAGCTCGCTGAGTCTCTCGCCGGCCACGGCCAGCGGGGATGCCAGCTCCCCGGACGGAGCCACCTGCATCCGCACCTACATCTCCACGGGCAGCTCGGTGGTGGATGCGGCCACCGGCATCGCCTTGTCGGACGAGCAGATCAAGGCCATGAACCTGCCGATCAAGACGGGCGTGACCCTGCTGTCGCCCACCACCTCGACATCGTCAAATGCCTCCTCTACGGCCTCGTCATCGTCCTCAGCCTCCGCCTCCACCTCGGCCTCTATCTCTTCGCTCTCCTCGGCGACATCTGGTATAGGTTTGACGGCGGGATCATCGCCTTCGGGCGGCGGCACCGTGATAGCCACCAGCTCGCCGGCGCCGACCATCACGCTCAGCGATGGAATGAGCCTCGAGGGAGAGGGCCTGACCCGCGAGCAGCTGGACCTCATCAGCAAGATCATGCAGCAGACGAAGCAGACGAGCGCCCAGGTCACCGTCTCCTCGCCCACCAGCGTCAGCTCCTACAAGATCAACACGAACTCGGCGCCATCGCAGGCCAGGCCGCGGACCTGGAACATGCAATTGCTCAACAATGCCCAGAATGTGACGGTCACCGTTGAGGACAACACCGATCTAGTTGCTCCTTCCTCTAGCTCCCCCGTGGAGGttaaggaggaggagctcaGTCCCCAGCTTGTGGCCGCCATCAATCCCCACCTGCTCAACATTGTGAAGCTCGACAAGCCCGTCGAATGCAATCTGTGTCACCGAAAGTTCAAAAACATACCCGCCCTAAACGGGCACATGCGACTCCATGGTGGTTACTACAAGAAGGATCCGGAAACCAAGCGCAGCGAGAAGAAGGACTCCAGTGGTCCGCCCCTGCAGACGGCCAGCATCGGAGTAAGAGCCCTCATAGAGGAGAAGATCATCAGCAAGCGCAAGGACATGACAAAGGGCTCCTTTGTGGTTCCCGCACCGCCTCACAGCagcggcaccaccaccaccctgCGACGATCCATCAGCGACCTGGAGAGTTTCCTCAATCCGAAGAGCAGCTCCAGTGGTCACACCCAAACCCTGACCACCGGCACTGGCACCACCACGGCGGTACTTCCGGCGGCCACCACGATTAAGAGCAGCAATGGCCTCAGCATCCAGCAGATCGGTCTGCCGCAGAGCATCGAGATCTTTAGCGGCAGCCAAAAGCAGGCAAAGACTCTAAATCTGGGCAGTGGCACCAATACCATCACTATAACCACCAACAATGtgcccaccaccaccacgatGAGCGCACTGACCGCCTTGAAGGCCGGCGGCACCATTAGCGGCATTTCCACGGCCACCAACACGGATCCCAAGGACTCCACGCTGATTGAGCTCCTCAAGCGGGGCACACGCATTGCAGTGACTTCGAAGAAGGCCCAGGCCCAGTGCCAAACGACATCCGGTGTGCTGATGACCTCCAGTTCCACGGCCACGCAATCGATGGGAACCCTCACCGAACTAACCACCATTGGCGGGAGCAGTGTCCAGACAGTGGGCCGTCAGATCATCACGAACAACAACCGAACCGTGATCATACCCTCCGACGTCCAGGTGGTGTCTACCAAGAGCAAGTTGAGCAGCCTGAGCAGTCTGGTGAAGAGCACAAgcaccacctccagctccaCCAACACCGGCTGCTCCTCGGGCAATATCTCGCTGGCTGACGGTACTCCGCTCTCGCTCACCATAGCGCCCAGTCAGGAAGGATCCACTGGCGGTGCTCCGAGCGGGACTGGGGGTGTGATAACcagcggtggcggtggtgtCTACACGGTGACCTACACCAGCGATGGCACCGATCTCTTTGACGATGCCGAAGTGTACAACGTGTCCGACACGGAGATGCTGCTGCAGACGGTGGACTCAATGGAGCTGCTcaacgacgacgaggaggagccgCAGATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTGAGCGAGGCGGGCGACAGTGAGCACACCCAGCTGGTGAAGCTGGAGACGGAGAGTGGGCAGAGCGGCTGCAACTCCTCCGGGGGAGCGGTAGCGGGGGCCAATACAACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCCATAGCCAGCATGCGGGCAGGCGGAAATGGTGCAGGGGCTGGTAATGGTAGTGGTGTCCTGGCCTCCCCGCTCCACTCGCCGCTGGCCTATCCCACGCCGCCGTCGAGCCACGAGAACATGGCGCAGAGTTCGCCCTTCATCGAAGATGCGGCCGCCCAGTTCGTGGATGCCAGCAACACCTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAGACGGACGAGGGCCAGGCCACCATCGAGCAGATGAGCGAGCACGACAACGAGAAGATCCTCAAGCTGAAGTCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCCATCAAGGTGGAGGACCTGCTCAATGGCACCGACGACGACACCGAGTGCGACCTGCGCGAGTTCGCCGAGACGAATCTCTCGTTCCTGGACGAGGACCAGGAGTTCCTCAACGACTCCCGCAATGCCACCTCCCCGCTCTCGGAGTCCTTCTTCACCAGCGGCATTGGCTCCGCTGAGGATGTGAAGCAGGTCCTGCGCGAGGTCCTGCCGGATGAGAacatgcagctgcagctgacCAGCGAGCAGCAGGGCGAGAACATAATCGATCTCTACTACCTGCCGGGCCTGGGACTGCAGTCCCAGATGATGCCCAACTCGGAGGACCCCTTGCTGTCCTCCTCGCCCAGGGAGTTTggtcagcagcggcagcagatgGGCAGCATGCAGCCcctggagcagcagctccagcagaaTGGCAACCTgtaccagcaacagcagcagcagcaggatcagacgcagcagctgctccaggAACAGCCCCAGCAGGAGccaacgcagcagcagcagcagcaataccAGCAGATCATCCTCCCCCAGCAAACGTCAAATCAGGGGGAATCCTTGCCAGCGGTGGTGCAGCAGCAGACCGATTTCATGCTGCCCCTGGTGGGAGGCCATGGCTTCGCCCAAATCTCCTCCGGCCAGACCCAGTACATGGACAATGGTCAGGGCAACATACAGGAAATGCAGCCCCTCAACAGCCTGCTGCAGCCGCTGCTCTACCAAGGAGCCGTCACTACCAATGGCATGGCCGCCGGCGGACAAGAGAGCCTGCTGCCCACCGATTGCCAAATGAATGTCAATCAGAGCCAGACAACGACGACTCTGGATGCCGGTCTGTTGTTCGCCTGCggcaacaccaccaccaccaccaccagtaCAGCCACGACAATGGGTAATAAATCCCTGCTAGCCGCGGGGCCCTTGCCCGGCACTGTGGCCAATCTGCAGCCGCTGTCGAACCAAACCAATTCCATTCTGAAGCGCCGCCTGCGCTCCAGTGCGCCCCAGGAGACGCACAAGTTCTCCAAGTTTCACACGCTCTCGCCGCACCGCTCCAAGCTGCGCAAGCCCTCCCGCACCCACTACACGCCCGCTCCGATCCTGAATCCGGATCGCAAGGGCACCGGCCTCTACTGCAGCGTCCGCAAGCAGCTGGGTCTGGGCCAGGGTCTCTTCGATGACTTCGACGACGACTTTGGCGATCCGGTGGGGCTGGTCGACTTCTCCGACGAGTCCAAGGTGAATCTGGGCTCCACTTACCAGGCACAGATACCCAGCTGCCGGCCGCCGGAGGAGGCTGCGCGAGACCCACTCGGCGCCGAGTTGATGTGGAATCCCGAGGTGCAGGAGGACGAGAAGATCCTGATGCGCTACATTGATCTCAGCAAGTCCTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCAAACGCTGCTCAAGGCCAGGGGCAACTCGGCGGCAGCGGTGCTCACCCTGCTGCAGACGCAATCCGGCGCCTTCCAGATGAAGTGGACGGCCTACGAGCTGGAGCAGTTCCTGCGTGGCCTGGAGAAGCATGGCAAGGACTTTGGCAAGATTGCCGGCGAGCTCCTCACCAAGTCGTCCGGCGAGTGCGTGCAGATGTACTACTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTGTCGCACCTGAAGATGGAGCCGGTGGTGGTGATCACGCCCGCCGTGGAGAAGCCCTATGTCTGCGAGATTGCCGACTGCTCAGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTCCGCATTCACGCTTATGGTCGCAGCAACAGTAGCAACAccagcaatagcaacaacaatgccaaCAGCAGTAGCAACAATGGCCAGCATGGCACGGCCACTAGTGCCAATAgtagcagcggcaacagcagcagcaacaccaacggcagcggcaacagcaatggcaacggcagcagcagcaacatgaaCAGCAACTacgccagcaacagcagcaacaataacccCGCCAGCAATGCAGCAAGTGCAACGGGAGCAGGTGCCGCAGGAGCCGCACACGGCAGCAACTGCACTCAGAATCCTGGCGCCACGACGGGAGCTGCTGGCGCCGCGACCGCCATCGCGGCCACATCCAAGGCGGAGCAGGGAATTAACGCCATACCAGGTGCCGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCATATGAAGACCCATCGTATCCAGGAGCCGGATCagaagcaccagcagcaactcAGCCATCAGTCGgtatcagcagcaggagctggagcagcagcaggatcaggACTGGCCACGGTGGTGGCCACAGCATCCAGCATCACCAATTCGTCGTag
Protein Sequence
TCCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGATTPTTTSQQSLSPTASSSGASSSSSSGVGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSSSSASASTSASISSLSSATSGIGLTAGSSPSGGGTVIATSSPAPTITLSDGMSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSAPSQARPRTWNMQLLNNAQNVTVTVEDNTDLVAPSSSSPVEVKEEELSPQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKSSSSGHTQTLTTGTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGSQKQAKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKAQAQCQTTSGVLMTSSSTATQSMGTLTELTTIGGSSVQTVGRQIITNNNRTVIIPSDVQVVSTKSKLSSLSSLVKSTSTTSSSTNTGCSSGNISLADGTPLSLTIAPSQEGSTGGAPSGTGGVITSGGGGVYTVTYTSDGTDLFDDAEVYNVSDTEMLLQTVDSMELLNDDEEEPQIKSEHSEDFALLSEAGDSEHTQLVKLETESGQSGCNSSGGAVAGANTTPLPTFQQFHSKELIMQNSSQIQAIASMRAGGNGAGAGNGSGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGQATIEQMSEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQMGSMQPLEQQLQQNGNLYQQQQQQQDQTQQLLQEQPQQEPTQQQQQQYQQIILPQQTSNQGESLPAVVQQQTDFMLPLVGGHGFAQISSGQTQYMDNGQGNIQEMQPLNSLLQPLLYQGAVTTNGMAAGGQESLLPTDCQMNVNQSQTTTTLDAGLLFACGNTTTTTTSTATTMGNKSLLAAGPLPGTVANLQPLSNQTNSILKRRLRSSAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCSVRKQLGLGQGLFDDFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCRPPEEAARDPLGAELMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLKARGNSAAAVLTLLQTQSGAFQMKWTAYELEQFLRGLEKHGKDFGKIAGELLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVVVITPAVEKPYVCEIADCSASFSSKAALHGHVRIHAYGRSNSSNTSNSNNNANSSSNNGQHGTATSANSSSGNSSSNTNGSGNSNGNGSSSNMNSNYASNSSNNNPASNAASATGAGAAGAAHGSNCTQNPGATTGAAGAATAIAATSKAEQGINAIPGAAKEGEFPCKVCGKVFNKVKSRSAHMKTHRIQEPDQKHQQQLSHQSVSAAGAGAAAGSGLATVVATASSITNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00605509;
90% Identity
iTF_00561991;
80% Identity
iTF_00561991;