Dnik017338.1
Basic Information
- Insect
- Drosophila nikananu
- Gene Symbol
- bab1
- Assembly
- GCA_008042635.1
- Location
- VNJV01006350.1:117303-118925[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-18 1.4e-14 54.0 0.0 1 43 55 98 55 100 0.95 2 3 1.6 4.3e+03 -2.0 0.2 6 12 209 215 201 219 0.69 3 3 3.3 8.8e+03 -3.1 0.1 4 11 224 231 224 231 0.84
Sequence Information
- Coding Sequence
- ATGATGGAGAACTCGCATGCCTGGATGGGAGCCACCGGATCCACGCTGGCAGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAATCTGATGCATCACATGCGCTTCCGCGAGCGGGGCCCGTTGAAGTCCTGGCGCCCCGAGACCATGGCGGAGGCCATCTTCAGCGTGCTGAAGGAGGGCTTGTCCCTGTCGCAGGCTGCCCGCAAGTACGACATCCCGTATCCCACCTTCGTGCTGTATGCCAATCGAGTGCACAATATGCTGGGACCCTCCATCGACGGCGGTCCGGATCTGCGGCCCAAGGGCCGTGGGAGACCGCAGAGGATCCTGCTGGGCATCTGGCCCGATGAGCACATCAAGGGCGTTATCAAGACGGTGGTTTTTCGCGATGCCAAGGACATAAAAGACGATAGTTTGGGGGCTCACATGCCGCCCTACGGTCGCCACTCGCCCGCGTTTCCCTTGCAGGACCTCCCACTGAGCTATCCGGGCGCTAGTGGCGCCCTCGCCGGGACTCCGAGCTCGCTGGCCTGTCCTAATGGCAGCGGTCCCCAGTCGGGCGTCGGCGGGGAACAGCACATGTCGCAGGAAACGGCCGCAGCGGTGGCCGCCGTGGCCCACAACATCCGGCAGCAGATGCAGATGGCAGCGGCCGTGCAGCATCAGCACGGGGAGGCGGGGCCGCCGCCCGTTCCGCCGGGTTTGTTCAACCTGCCGCCCCATCCGGGCGTGGGCGTTGGCGTCGGTTCGGTTTCGGATCTGGCCGAACTGGTCGGTGCCAGTGTCTCATCCTCCTCGTcttcggcggcagcggcggccggGATTGTGGCTGCCCAGCAGGAGAGATCAGGTGGAGGAGCGTCGGCGGCAGCGGGAGCCGATGCGCCCAGCTCCTCGAGCGGCGGTGGCATCAAGGTGGAGCCAATTACCACCACTAGCGAGTAA
- Protein Sequence
- MMENSHAWMGATGSTLAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDDSLGAHMPPYGRHSPAFPLQDLPLSYPGASGALAGTPSSLACPNGSGPQSGVGGEQHMSQETAAAVAAVAHNIRQQMQMAAAVQHQHGEAGPPPVPPGLFNLPPHPGVGVGVGSVSDLAELVGASVSSSSSSAAAAAGIVAAQQERSGGGASAAAGADAPSSSSGGGIKVEPITTTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492155;
- 90% Identity
- -
- 80% Identity
- -